登録情報 | データベース: PDB / ID: 2yaj |
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タイトル | CRYSTAL STRUCTURE OF GLYCYL RADICAL ENZYME with bound substrate |
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要素 | - 4-HYDROXYPHENYLACETATE DECARBOXYLASE LARGE SUBUNIT
- 4-HYDROXYPHENYLACETATE DECARBOXYLASE SMALL SUBUNIT
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キーワード | LYASE / RADICAL CHEMISTRY / METALLOENZYME / IRON-SULFUR CENTER |
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機能・相同性 | 機能・相同性情報
4-hydroxyphenylacetate decarboxylase / 4-hydroxyphenylacetate decarboxylase activity / 4 iron, 4 sulfur cluster binding / metal ion binding / cytosol類似検索 - 分子機能 Ubiquitin Ligase Nedd4; Chain: W; - #100 / 4-hydroxyphenylacetate decarboxylase small gamma subunit, C-terminal / 4-hydroxyphenylacetate decarboxylase small gamma subunit, N-terminal / : / High potential iron-sulfur protein like / 4-Hydroxyphenylacetate decarboxylase subunit gamma N-terminal / : / Pyruvate formate lyase domain / Pyruvate formate lyase-like / Pyruvate formate-lyase domain profile. ...Ubiquitin Ligase Nedd4; Chain: W; - #100 / 4-hydroxyphenylacetate decarboxylase small gamma subunit, C-terminal / 4-hydroxyphenylacetate decarboxylase small gamma subunit, N-terminal / : / High potential iron-sulfur protein like / 4-Hydroxyphenylacetate decarboxylase subunit gamma N-terminal / : / Pyruvate formate lyase domain / Pyruvate formate lyase-like / Pyruvate formate-lyase domain profile. / Glycine radical / Glycine radical domain / Glycine radical domain profile. / Anaerobic Ribonucleotide-triphosphate Reductase Large Chain / Anaerobic Ribonucleotide-triphosphate Reductase Large Chain - #20 / Ubiquitin Ligase Nedd4; Chain: W; / Single Sheet / Alpha-Beta Barrel / Mainly Beta / Alpha Beta類似検索 - ドメイン・相同性 4-HYDROXYPHENYLACETATE / IRON/SULFUR CLUSTER / 4-hydroxyphenylacetate decarboxylase small subunit / 4-hydroxyphenylacetate decarboxylase glycyl radical subunit類似検索 - 構成要素 |
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生物種 | CLOSTRIDIUM SCATOLOGENES (バクテリア) |
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手法 | X線回折 / 分子置換 / 解像度: 1.813 Å |
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データ登録者 | Martins, B.M. / Blaser, M. / Feliks, M. / Ullmann, G.M. / Selmer, T. |
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引用 | ジャーナル: J.Am.Chem.Soc. / 年: 2011 タイトル: Structural Basis for a Kolbe-Type Decarboxylation Catalyzed by a Glycyl Radical Enzyme. 著者: Martins, B.M. / Blaser, M. / Feliks, M. / Ullmann, G.M. / Buckel, W. / Selmer, T. |
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履歴 | 登録 | 2011年2月23日 | 登録サイト: PDBE / 処理サイト: PDBE |
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改定 1.0 | 2011年9月21日 | Provider: repository / タイプ: Initial release |
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改定 1.1 | 2011年10月19日 | Group: Database references |
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改定 1.2 | 2017年7月5日 | Group: Data collection / カテゴリ: diffrn_source / Item: _diffrn_source.type |
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改定 2.0 | 2019年10月16日 | Group: Atomic model / Data collection ...Atomic model / Data collection / Experimental preparation / Other カテゴリ: atom_site / exptl_crystal_grow ...atom_site / exptl_crystal_grow / pdbx_database_status / reflns_shell Item: _atom_site.B_iso_or_equiv / _atom_site.Cartn_x ..._atom_site.B_iso_or_equiv / _atom_site.Cartn_x / _atom_site.Cartn_y / _atom_site.Cartn_z / _exptl_crystal_grow.method / _pdbx_database_status.status_code_sf / _reflns_shell.Rmerge_I_obs |
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改定 2.1 | 2023年12月20日 | Group: Advisory / Data collection ...Advisory / Data collection / Database references / Derived calculations / Refinement description カテゴリ: chem_comp_atom / chem_comp_bond ...chem_comp_atom / chem_comp_bond / database_2 / pdbx_initial_refinement_model / pdbx_struct_conn_angle / pdbx_unobs_or_zero_occ_atoms / struct_conn / struct_site Item: _database_2.pdbx_DOI / _database_2.pdbx_database_accession ..._database_2.pdbx_DOI / _database_2.pdbx_database_accession / _pdbx_struct_conn_angle.ptnr1_auth_seq_id / _pdbx_struct_conn_angle.ptnr1_label_atom_id / _pdbx_struct_conn_angle.ptnr1_label_seq_id / _pdbx_struct_conn_angle.ptnr2_label_atom_id / _pdbx_struct_conn_angle.ptnr3_label_atom_id / _pdbx_struct_conn_angle.value / _struct_conn.pdbx_dist_value / _struct_conn.ptnr1_auth_comp_id / _struct_conn.ptnr1_auth_seq_id / _struct_conn.ptnr1_label_asym_id / _struct_conn.ptnr1_label_atom_id / _struct_conn.ptnr1_label_comp_id / _struct_conn.ptnr1_label_seq_id / _struct_conn.ptnr2_auth_comp_id / _struct_conn.ptnr2_auth_seq_id / _struct_conn.ptnr2_label_asym_id / _struct_conn.ptnr2_label_atom_id / _struct_conn.ptnr2_label_comp_id / _struct_conn.ptnr2_label_seq_id / _struct_site.pdbx_auth_asym_id / _struct_site.pdbx_auth_comp_id / _struct_site.pdbx_auth_seq_id |
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