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- PDB-2xmj: Visualising the Metal-binding Versatility of Copper Trafficking S... -
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Open data
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Basic information
Entry | Database: PDB / ID: 2xmj | ||||||
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Title | Visualising the Metal-binding Versatility of Copper Trafficking Sites: Atx1 side-to-side (aerobic) | ||||||
![]() | SSR2857 PROTEIN | ||||||
![]() | CHAPERONE / COPPER HOMEOSTASIS / P-TYPE ATPASE / METAL TRANSPORT | ||||||
Function / homology | ![]() | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() ![]() | ||||||
![]() | Badarau, A. / Firbank, S.J. / McCarthy, A.A. / Banfield, M.J. / Dennison, C. | ||||||
![]() | ![]() Title: Visualizing the Metal-Binding Versatility of Copper Trafficking Sites . Authors: Badarau, A. / Firbank, S.J. / Mccarthy, A.A. / Banfield, M.J. / Dennison, C. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 72.9 KB | Display | ![]() |
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PDB format | ![]() | 54.7 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 417.5 KB | Display | ![]() |
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Full document | ![]() | 418.1 KB | Display | |
Data in XML | ![]() | 10.3 KB | Display | |
Data in CIF | ![]() | 15 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 2xmkC ![]() 2xmmC ![]() 2xmtC ![]() 2xmuC ![]() 2xmvC ![]() 2xmwC C: citing same article ( |
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Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components on special symmetry positions |
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Components
#1: Protein | Mass: 6690.513 Da / Num. of mol.: 2 Source method: isolated from a genetically manipulated source Details: 2 COPPER IONS PER MONOMER / Source: (gene. exp.) ![]() ![]() ![]() ![]() #2: Chemical | ChemComp-CU / #3: Chemical | #4: Chemical | ChemComp-NA / | #5: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.7 Å3/Da / Density % sol: 54 % / Description: NONE |
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Crystal grow | pH: 6.5 Details: 25 % (W/V) PEG 8000, 200 MM SODIUM ACETATE, 100 MM SODIUM CACODYLATE PH 6.5 |
-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: ADSC CCD / Detector: CCD |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.933 Å / Relative weight: 1 |
Reflection | Resolution: 1.08→13.81 Å / Num. obs: 56359 / % possible obs: 95.9 % / Observed criterion σ(I): 0 / Redundancy: 6.4 % / Rmerge(I) obs: 0.06 / Net I/σ(I): 17.9 |
Reflection shell | Resolution: 1.08→1.14 Å / Redundancy: 6.4 % / Rmerge(I) obs: 0.23 / Mean I/σ(I) obs: 4.4 / % possible all: 92.8 |
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Processing
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Refinement | Method to determine structure: AB INITIO PHASING Starting model: NONE Resolution: 1.08→10 Å / Num. parameters: 11309 / Num. restraintsaints: 14392 / Cross valid method: FREE R-VALUE / σ(F): 0 / Stereochemistry target values: ENGH AND HUBER
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Refine analyze | Num. disordered residues: 44 / Occupancy sum hydrogen: 641.63 / Occupancy sum non hydrogen: 1134.5 | |||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 1.08→10 Å
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Refine LS restraints |
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