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Open data
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Basic information
Entry | Database: PDB / ID: 2wux | ||||||
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Title | the crystal structure of recombinant baculovirus polyhedra | ||||||
![]() | POLYHEDRIN | ||||||
![]() | VIRAL PROTEIN / MICROCRYSTALS / POLYHEDRA / VIRAL OCCLUSION BODY / VIRAL CAPSID | ||||||
Function / homology | Polyhedrin / Polyhedrin / host cell nuclear matrix / viral occlusion body / structural molecule activity / identical protein binding / Polyhedrin![]() | ||||||
Biological species | ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Ji, X. / Sutton, G. / Evans, G. / Axford, D. / Owen, R. / Stuart, D.I. | ||||||
![]() | ![]() Title: How Baculovirus Polyhedra Fit Square Pegs Into Round Holes to Robustly Package Viruses. Authors: Ji, X. / Sutton, G. / Evans, G. / Axford, D. / Owen, R. / Stuart, D.I. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 97.1 KB | Display | ![]() |
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PDB format | ![]() | 79.7 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 426.1 KB | Display | ![]() |
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Full document | ![]() | 430.4 KB | Display | |
Data in XML | ![]() | 10.7 KB | Display | |
Data in CIF | ![]() | 14.2 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 28736.764 Da / Num. of mol.: 1 / Mutation: YES Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() Plasmid: PBACPAK9 / Cell line (production host): SF9 / Production host: ![]() ![]() |
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#2: Water | ChemComp-HOH / |
Compound details | ENGINEERED |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 1.57 Å3/Da / Density % sol: 21.5 % / Description: NONE |
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Crystal grow | pH: 7.5 / Details: pH 7.5 |
-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: RAYONIX / Detector: CCD / Date: Mar 12, 2009 / Details: MIRRORS |
Radiation | Monochromator: DOUBLE CRYSTAL MONOCHROMATOR / Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.9778 Å / Relative weight: 1 |
Reflection | Resolution: 1.84→50 Å / Num. obs: 15809 / % possible obs: 100 % / Observed criterion σ(I): -1.5 / Redundancy: 14.7 % / Biso Wilson estimate: 22.75 Å2 / Rmerge(I) obs: 0.21 / Net I/σ(I): 12.1 |
Reflection shell | Resolution: 1.84→1.91 Å / Redundancy: 10.9 % / Mean I/σ(I) obs: 1 / % possible all: 100 |
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Processing
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Refinement | Method to determine structure: ![]() Starting model: NONE Resolution: 1.838→36.268 Å / SU ML: 0.22 / σ(F): 1.34 / Phase error: 20.57 / Stereochemistry target values: ML / Details: RESIDUES 3-7 WERE TRACED AS POLY ALA MODEL
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Solvent computation | Shrinkage radii: 0.9 Å / VDW probe radii: 1.11 Å / Solvent model: FLAT BULK SOLVENT MODEL / Bsol: 94.351 Å2 / ksol: 0.445 e/Å3 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso mean: 34.1 Å2 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 1.838→36.268 Å
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Refine LS restraints |
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LS refinement shell |
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Refinement TLS params. | Method: refined / Refine-ID: X-RAY DIFFRACTION
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Refinement TLS group |
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