- PDB-2uyg: Crystallogaphic structure of the typeII 3-Dehydroquinase from The... -
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基本情報
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データベース: PDB / ID: 2uyg
タイトル
Crystallogaphic structure of the typeII 3-Dehydroquinase from Thermus Thermophilus
要素
3-DEHYDROQUINATE DEHYDRATASE
キーワード
LYASE / TYPEII 3-DEHYDROQUINASE
機能・相同性
機能・相同性情報
3-dehydroquinate dehydratase / 3-dehydroquinate dehydratase activity / chorismate biosynthetic process / aromatic amino acid family biosynthetic process 類似検索 - 分子機能
Dehydroquinase, class II / Dehydroquinase, class II, conserved site / Dehydroquinase class II signature. / Dehydroquinase, class II / Dehydroquinase, class II superfamily / Dehydroquinase class II / Rossmann fold / 3-Layer(aba) Sandwich / Alpha Beta 類似検索 - ドメイン・相同性
タイプ: JUPITER 210 / 検出器: CCD / 日付: 2004年10月19日 詳細: A FIXED EXIT SI DOUBLE CRYSTAL MONOCHROMATOR FOLLOWED BY A TWO DIMENSIONAL FOCUSING MIRROR WHICH IS COATED IN RHODIUM.
放射
モノクロメーター: SI DOUBLE CRYSTAL MONOCHROMATOR / プロトコル: SINGLE WAVELENGTH / 単色(M)・ラウエ(L): M / 散乱光タイプ: x-ray
放射波長
波長: 1 Å / 相対比: 1
反射
解像度: 2.2→48.2 Å / Num. obs: 103688 / % possible obs: 99.3 % / Observed criterion σ(I): 1 / 冗長度: 6.8 % / Rmerge(I) obs: 0.06 / Net I/σ(I): 11
反射 シェル
解像度: 2.2→2.28 Å / Rmerge(I) obs: 0.29 / % possible all: 94.4
解像度: 2.2→48.22 Å / Cor.coef. Fo:Fc: 0.929 / Cor.coef. Fo:Fc free: 0.904 / SU B: 6.841 / SU ML: 0.174 / 交差検証法: THROUGHOUT / ESU R: 0.286 / ESU R Free: 0.231 / 立体化学のターゲット値: MAXIMUM LIKELIHOOD 詳細: HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. STRUCTURAL GENOMICS PROJECT NAME NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES STRUCTURAL GENOMICS PROJECT CENTER ...詳細: HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. STRUCTURAL GENOMICS PROJECT NAME NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES STRUCTURAL GENOMICS PROJECT CENTER NAME RIKEN STRUCTURAL GENOMICS PROTEOMICS INITIATIVE
Rfactor
反射数
%反射
Selection details
Rfree
0.277
5126
5 %
RANDOM
Rwork
0.23
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obs
0.232
97744
98.5 %
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溶媒の処理
イオンプローブ半径: 0.8 Å / 減衰半径: 0.8 Å / VDWプローブ半径: 1.4 Å / 溶媒モデル: BABINET MODEL WITH MASK