- PDB-2uyg: Crystallogaphic structure of the typeII 3-Dehydroquinase from The... -
+
Open data
ID or keywords:
Loading...
-
Basic information
Entry
Database: PDB / ID: 2uyg
Title
Crystallogaphic structure of the typeII 3-Dehydroquinase from Thermus Thermophilus
Components
3-DEHYDROQUINATE DEHYDRATASE
Keywords
LYASE / TYPEII 3-DEHYDROQUINASE
Function / homology
Function and homology information
3-dehydroquinate dehydratase / 3-dehydroquinate dehydratase activity / chorismate biosynthetic process / aromatic amino acid family biosynthetic process Similarity search - Function
Dehydroquinase, class II / Dehydroquinase, class II, conserved site / Dehydroquinase class II signature. / Dehydroquinase, class II / Dehydroquinase, class II superfamily / Dehydroquinase class II / Rossmann fold / 3-Layer(aba) Sandwich / Alpha Beta Similarity search - Domain/homology
Type: JUPITER 210 / Detector: CCD / Date: Oct 19, 2004 Details: A FIXED EXIT SI DOUBLE CRYSTAL MONOCHROMATOR FOLLOWED BY A TWO DIMENSIONAL FOCUSING MIRROR WHICH IS COATED IN RHODIUM.
Radiation
Monochromator: SI DOUBLE CRYSTAL MONOCHROMATOR / Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray
Radiation wavelength
Wavelength: 1 Å / Relative weight: 1
Reflection
Resolution: 2.2→48.2 Å / Num. obs: 103688 / % possible obs: 99.3 % / Observed criterion σ(I): 1 / Redundancy: 6.8 % / Rmerge(I) obs: 0.06 / Net I/σ(I): 11
Reflection shell
Resolution: 2.2→2.28 Å / Rmerge(I) obs: 0.29 / % possible all: 94.4
Resolution: 2.2→48.22 Å / Cor.coef. Fo:Fc: 0.929 / Cor.coef. Fo:Fc free: 0.904 / SU B: 6.841 / SU ML: 0.174 / Cross valid method: THROUGHOUT / ESU R: 0.286 / ESU R Free: 0.231 / Stereochemistry target values: MAXIMUM LIKELIHOOD Details: HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. STRUCTURAL GENOMICS PROJECT NAME NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES STRUCTURAL GENOMICS PROJECT CENTER ...Details: HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. STRUCTURAL GENOMICS PROJECT NAME NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES STRUCTURAL GENOMICS PROJECT CENTER NAME RIKEN STRUCTURAL GENOMICS PROTEOMICS INITIATIVE
Rfactor
Num. reflection
% reflection
Selection details
Rfree
0.277
5126
5 %
RANDOM
Rwork
0.23
-
-
-
obs
0.232
97744
98.5 %
-
Solvent computation
Ion probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.4 Å / Solvent model: BABINET MODEL WITH MASK