+Open data
-Basic information
Entry | Database: PDB / ID: 2uxe | ||||||
---|---|---|---|---|---|---|---|
Title | The structure of Vaccinia virus N1 | ||||||
Components | HYPOTHETICAL PROTEIN | ||||||
Keywords | VIRAL PROTEIN / BCL-LIKE PROTEIN / HYPOTHETICAL PROTEIN / VIRAL PROTEIN APOPTOSIS / VACCINIA VIRUS / VIRULENCE FACTOR | ||||||
Function / homology | Function and homology information symbiont-mediated perturbation of host apoptosis / virus-mediated perturbation of host defense response Similarity search - Function | ||||||
Biological species | VACCINIA VIRUS | ||||||
Method | X-RAY DIFFRACTION / SYNCHROTRON / MAD / Resolution: 2.9 Å | ||||||
Authors | Cooray, S. / Bahar, M.W. / Abrescia, N.G.A. / McVey, C.E. / Bartlett, N.W. / Chen, R.A.-J. / Stuart, D.I. / Grimes, J.M. / Smith, G.L. | ||||||
Citation | Journal: J.Gen.Virol. / Year: 2007 Title: Functional and Structural Studies of the Vaccinia Virus Virulence Factor N1 Reveal a Bcl-2-Like Anti- Apoptotic Protein Authors: Cooray, S. / Bahar, M.W. / Abrescia, N.G.A. / Mcvey, C.E. / Bartlett, N.W. / Chen, R.A.-J. / Stuart, D.I. / Grimes, J.M. / Smith, G.L. | ||||||
History |
|
-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
---|
-Downloads & links
-Download
PDBx/mmCIF format | 2uxe.cif.gz | 143.4 KB | Display | PDBx/mmCIF format |
---|---|---|---|---|
PDB format | pdb2uxe.ent.gz | 121.6 KB | Display | PDB format |
PDBx/mmJSON format | 2uxe.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 2uxe_validation.pdf.gz | 468.3 KB | Display | wwPDB validaton report |
---|---|---|---|---|
Full document | 2uxe_full_validation.pdf.gz | 489.3 KB | Display | |
Data in XML | 2uxe_validation.xml.gz | 26.4 KB | Display | |
Data in CIF | 2uxe_validation.cif.gz | 30.1 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/ux/2uxe ftp://data.pdbj.org/pub/pdb/validation_reports/ux/2uxe | HTTPS FTP |
-Related structure data
Related structure data | |
---|---|
Similar structure data |
-Links
-Assembly
Deposited unit |
| ||||||||
---|---|---|---|---|---|---|---|---|---|
1 |
| ||||||||
2 |
| ||||||||
3 |
| ||||||||
Unit cell |
|
-Components
#1: Protein | Mass: 14290.240 Da / Num. of mol.: 6 / Mutation: YES Source method: isolated from a genetically manipulated source Source: (gene. exp.) VACCINIA VIRUS / Strain: WESTERN RESERVE / Production host: ESCHERICHIA COLI (E. coli) / Strain (production host): B834 / References: UniProt: Q49PX0 Compound details | ENGINEERED RESIDUE IN CHAIN A, CYS 40 TO SER ENGINEERED RESIDUE IN CHAIN B, CYS 40 TO SER ...ENGINEERED | Sequence details | CYS 40 WAS MUTATED TO SER SEMET WAS INCORPORAT | |
---|
-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION / Number of used crystals: 1 |
---|
-Sample preparation
Crystal | Density Matthews: 3.2 Å3/Da / Density % sol: 61.21 % |
---|---|
Crystal grow | pH: 6.2 Details: 0.2 M NA/K PHOSPHATE, 0.2 M NACL AND 10% PEG 8000, PH 6.2 |
-Data collection
Diffraction | Mean temperature: 100 K |
---|---|
Diffraction source | Source: SYNCHROTRON / Site: ESRF / Beamline: ID23-1 / Wavelength: 0.9794 |
Detector | Type: ADSC CCD / Detector: CCD |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.9794 Å / Relative weight: 1 |
Reflection | Resolution: 2.9→30 Å / Num. obs: 22319 / % possible obs: 100 % / Observed criterion σ(I): -5 / Redundancy: 11.9 % / Rmerge(I) obs: 0.14 / Net I/σ(I): 17.9 |
Reflection shell | Resolution: 2.9→3 Å / Redundancy: 11.4 % / Mean I/σ(I) obs: 1.8 / % possible all: 100 |
-Processing
Software |
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Refinement | Method to determine structure: MAD / Resolution: 2.9→30 Å / Data cutoff high absF: 10000 / Cross valid method: THROUGHOUT / σ(F): 0 / Stereochemistry target values: MAXIMUM LIKELIHOOD / Details: NCS CONSTRAINTS USED THROUGHOUT REFINEMENT
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Solvent computation | Solvent model: FLAT MODEL / Bsol: 70 Å2 / ksol: 0.31 e/Å3 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso mean: 75 Å2
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 2.9→30 Å
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refine LS restraints |
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refine LS restraints NCS | NCS model details: CONSTRAINTS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
LS refinement shell | Resolution: 2.9→2.95 Å / Total num. of bins used: 21
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Xplor file | Serial no: 1 / Param file: PROTEIN_REP.PARAM |