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- PDB-2rqj: Quadruplex structure of an RNA aptamer against bovine prion protein -
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Open data
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Basic information
Entry | Database: PDB / ID: 2rqj | ||||||||||||||||||||
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Title | Quadruplex structure of an RNA aptamer against bovine prion protein | ||||||||||||||||||||
![]() | RNA (5'-R(*![]() RNA / Aptamer / Prion / Quadruplex | Function / homology | RNA / RNA (> 10) | ![]() Method | SOLUTION NMR / simulated annealing | Model details | lowest energy, model 1 | ![]() Katahira, M. / Mashima, T. / Matsugami, A. / Nishikawa, F. / Nishikawa, S. | ![]() ![]() Title: Unique quadruplex structure and interaction of an RNA aptamer against bovine prion protein Authors: Mashima, T. / Matsugami, A. / Nishikawa, F. / Nishikawa, S. / Katahira, M. History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 138.3 KB | Display | ![]() |
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PDB format | ![]() | 116.6 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 318.1 KB | Display | ![]() |
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Full document | ![]() | 390.2 KB | Display | |
Data in XML | ![]() | 10.5 KB | Display | |
Data in CIF | ![]() | 16.3 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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NMR ensembles |
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Components
#1: RNA chain | Mass: 4033.512 Da / Num. of mol.: 2 / Source method: obtained synthetically |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR / Details: refined structure | ||||||||||||||||||||||||||||||||||||
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NMR experiment |
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Sample preparation
Details |
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Sample |
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Sample conditions |
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-NMR measurement
NMR spectrometer |
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Processing
NMR software |
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Refinement | Method: simulated annealing / Software ordinal: 1 | ||||||||||||||||||||||||||||||||||||||||
NMR representative | Selection criteria: lowest energy | ||||||||||||||||||||||||||||||||||||||||
NMR ensemble | Conformer selection criteria: structures with the lowest energy Conformers calculated total number: 200 / Conformers submitted total number: 9 / Representative conformer: 1 |