[English] 日本語
![](img/lk-miru.gif)
- PDB-2rj3: Crystal Structure of the Uridine Phosphorylase from Salmonella Ty... -
+
Open data
-
Basic information
Entry | Database: PDB / ID: 2rj3 | ||||||
---|---|---|---|---|---|---|---|
Title | Crystal Structure of the Uridine Phosphorylase from Salmonella Typhimurium in Complex with Uracil and Phosphate Ion at 2.49A Resolution | ||||||
![]() | Uridine phosphorylase | ||||||
![]() | TRANSFERASE / uridine phosphorylase / Cytoplasm / Glycosyltransferase | ||||||
Function / homology | ![]() nucleoside catabolic process / uridine phosphorylase / nucleotide catabolic process / uridine phosphorylase activity / UMP salvage / cytosol Similarity search - Function | ||||||
Biological species | ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Timofeev, V.I. / Pavlyuk, B.P. / Lashkov, A.A. / Gabdoulkhakov, A.G. / Mikhailov, A.M. | ||||||
![]() | ![]() Title: Crystal Structure of the Uridine Phosphorylase from Salmonella Typhimurium in Complex with Uracil and Phosphate Ion at 2.49A Resolution Authors: Timofeev, V.I. / Pavlyuk, B.P. / Lashkov, A.A. / Gabdoulkhakov, A.G. / Mikhailov, A.M. | ||||||
History |
|
-
Structure visualization
Structure viewer | Molecule: ![]() ![]() |
---|
-
Downloads & links
-
Download
PDBx/mmCIF format | ![]() | 287.1 KB | Display | ![]() |
---|---|---|---|---|
PDB format | ![]() | 230.4 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Arichive directory | ![]() ![]() | HTTPS FTP |
---|
-Related structure data
Related structure data | ![]() 2oecS S: Starting model for refinement |
---|---|
Similar structure data |
-
Links
-
Assembly
Deposited unit | ![]()
| ||||||||
---|---|---|---|---|---|---|---|---|---|
1 |
| ||||||||
Unit cell |
|
-
Components
#1: Protein | Mass: 27037.896 Da / Num. of mol.: 6 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() #2: Chemical | ChemComp-PO4 / #3: Chemical | ChemComp-URA / #4: Water | ChemComp-HOH / | |
---|
-Experimental details
-Experiment
Experiment | Method: ![]() |
---|
-
Sample preparation
Crystal | Density Matthews: 2.28 Å3/Da / Density % sol: 46.12 % |
---|---|
Crystal grow | Temperature: 297 K / Method: vapor diffusion, hanging drop / Details: VAPOR DIFFUSION, HANGING DROP, temperature 297K |
-Data collection
Diffraction | Mean temperature: 100 K |
---|---|
Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: MAR CCD 165 mm / Detector: CCD / Date: Sep 25, 2005 / Details: mirrors |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Relative weight: 1 |
Reflection | Resolution: 2.49→26.84 Å / Num. obs: 47321 |
-
Processing
Software | Name: REFMAC / Classification: refinement | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Refinement | Method to determine structure: ![]() Starting model: PDB ENTRY 2OEC Resolution: 2.51→15.98 Å
| ||||||||||||
Refinement step | Cycle: LAST / Resolution: 2.51→15.98 Å
|