+Open data
-Basic information
Entry | Database: PDB / ID: 2poh | ||||||
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Title | Structure of Phage P22 Tail Needle gp26 | ||||||
Components | Head completion protein | ||||||
Keywords | VIRAL PROTEIN / trimeric coiled-coil / triple beta-helix / heptad / membrane-penetration / fiber | ||||||
Function / homology | Function and homology information symbiont genome ejection through host cell envelope, short tail mechanism / virus tail / symbiont genome entry into host cell via pore formation in plasma membrane Similarity search - Function | ||||||
Biological species | Salmonella phage P22-pbi (virus) | ||||||
Method | X-RAY DIFFRACTION / SYNCHROTRON / AB INITIO / Resolution: 2.1 Å | ||||||
Authors | Olia, A.S. / Cingolani, G. | ||||||
Citation | Journal: Nat.Struct.Mol.Biol. / Year: 2007 Title: Structure of phage P22 cell envelope-penetrating needle. Authors: Olia, A.S. / Casjens, S. / Cingolani, G. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 2poh.cif.gz | 555.2 KB | Display | PDBx/mmCIF format |
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PDB format | pdb2poh.ent.gz | 471.3 KB | Display | PDB format |
PDBx/mmJSON format | 2poh.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 2poh_validation.pdf.gz | 449.8 KB | Display | wwPDB validaton report |
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Full document | 2poh_full_validation.pdf.gz | 573.6 KB | Display | |
Data in XML | 2poh_validation.xml.gz | 44.7 KB | Display | |
Data in CIF | 2poh_validation.cif.gz | 68.4 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/po/2poh ftp://data.pdbj.org/pub/pdb/validation_reports/po/2poh | HTTPS FTP |
-Related structure data
Related structure data | |
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Similar structure data |
-Links
-Assembly
Deposited unit |
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2 |
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Unit cell |
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Details | Asymetric unit contains 2 trimers, the trimer being biologically active unit |
-Components
#1: Protein | Mass: 24857.213 Da / Num. of mol.: 6 / Mutation: L222M Source method: isolated from a genetically manipulated source Source: (gene. exp.) Salmonella phage P22-pbi (virus) / Genus: P22-like viruses / Species: Enterobacteria phage P22 / Gene: 26 / Plasmid: pET-15b / Species (production host): Escherichia coli / Production host: Escherichia coli BL21(DE3) (bacteria) / Strain (production host): BL21(DE3) / References: UniProt: Q8LTG5, UniProt: P35837*PLUS #2: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION / Number of used crystals: 1 |
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-Sample preparation
Crystal | Density Matthews: 2.65 Å3/Da / Density % sol: 53.67 % |
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Crystal grow | Temperature: 293 K / Method: vapor diffusion, hanging drop / pH: 4.6 Details: 8% PEG8000; 0.1M Ammonium Sulfate, 0.05M NaCl, 0.1M Sodium Acetate pH4.6, VAPOR DIFFUSION, HANGING DROP, temperature 293.0K |
-Data collection
Diffraction |
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Diffraction source |
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Detector |
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Radiation | Protocol: MAD / Monochromatic (M) / Laue (L): M / Scattering type: x-ray | ||||||||||||||||||||||||
Radiation wavelength |
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Reflection | Resolution: 2.1→40 Å / Num. all: 90017 / Num. obs: 90017 / % possible obs: 99.2 % / Redundancy: 5.5 % / Biso Wilson estimate: 30 Å2 / Rsym value: 0.072 / Net I/σ(I): 15.9 | ||||||||||||||||||||||||
Reflection shell | Resolution: 2.1→2.21 Å / Redundancy: 5.5 % / Rmerge(I) obs: 0.353 / Mean I/σ(I) obs: 4.6 / Rsym value: 0.353 / % possible all: 98.7 |
-Processing
Software |
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Refinement | Method to determine structure: AB INITIO / Highest resolution: 2.1 Å / Num. parameters: 85 / Num. restraintsaints: 158758 / Cross valid method: FREE R / σ(F): 0 / Stereochemistry target values: ENGH AND HUBER Details: ANISOTROPIC REFINEMENT REDUCED FREE R (NO CUTOFF). The data is twinned with twinning operators: h, -k, -l, and corresponding twin fractions 0.23239.
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Displacement parameters | Biso mean: 28.3 Å2 | |||||||||||||||||||||||||||||||||
Refine analyze | Num. disordered residues: 0 / Occupancy sum hydrogen: 0 / Occupancy sum non hydrogen: 11261 /
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Refinement step | Cycle: LAST / Highest resolution: 2.1 Å
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Refine LS restraints |
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LS refinement shell | Resolution: 2.1→2.169 Å /
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