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Open data
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Basic information
Entry | Database: PDB / ID: 2nb2 | ||||||
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Title | Nigellin-1.1 | ||||||
![]() | nigellin-1.1 | ||||||
![]() | ANTIMICROBIAL PROTEIN / AMP / antimicrobial peptide / plant antimicrobial peptides / defense peptides / blackseed / antifungal activity / antibacterial activity / hairpin-like peptide / alpha-hairpinin | ||||||
Function / homology | Nigellin-1.1![]() | ||||||
Biological species | ![]() | ||||||
Method | SOLUTION NMR / simulated annealing, torsion angle dynamics | ||||||
Model details | fewest violations, model1 | ||||||
![]() | Bozin, T.N. / Bocharov, E.V. / Rogozhin, E.A. | ||||||
![]() | ![]() Title: A novel type of hairpin-like defense peptides from blackseed (Nigella sativa L.) contains three disulfide bridges Authors: Rogozhin, E.A. / Kozlov, S.A. / Andreev, Y.A. / Ryazantsev, Y.U. / Grishin, E.V. / Bozin, T.N. / Bocharov, E.V. | ||||||
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 311.7 KB | Display | ![]() |
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PDB format | ![]() | 274.8 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 387.2 KB | Display | ![]() |
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Full document | ![]() | 486.9 KB | Display | |
Data in XML | ![]() | 16 KB | Display | |
Data in CIF | ![]() | 25 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
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Links
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Assembly
Deposited unit | ![]()
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NMR ensembles |
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Components
#1: Protein/peptide | Mass: 4224.847 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) ![]() |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||||||||||
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NMR experiment |
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Sample preparation
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Sample |
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Sample conditions |
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-NMR measurement
NMR spectrometer | Type: Varian Uniform NMR System 700 / Manufacturer: Varian / Model: Uniform NMR System 700 / Field strength: 700 MHz |
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Processing
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Refinement | Method: simulated annealing, torsion angle dynamics / Software ordinal: 1 | |||||||||||||||||||||||||||||||||||||||
NMR representative | Selection criteria: fewest violations | |||||||||||||||||||||||||||||||||||||||
NMR ensemble | Conformer selection criteria: target function / Conformers calculated total number: 100 / Conformers submitted total number: 25 |