- PDB-2n29: Solution-state NMR structure of Vpu cytoplasmic domain -
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Basic information
Entry
Database: PDB / ID: 2n29
Title
Solution-state NMR structure of Vpu cytoplasmic domain
Components
Protein Vpu
Keywords
VIRAL PROTEIN / alpha helix
Function / homology
Function and homology information
nuclear transport / uncoating of virus / RNA-templated DNA biosynthetic process / receptor catabolic process / Synthesis and processing of ENV and VPU / CD4 receptor binding / Integration of viral DNA into host genomic DNA / Autointegration results in viral DNA circles / Minus-strand DNA synthesis / Plus-strand DNA synthesis ...nuclear transport / uncoating of virus / RNA-templated DNA biosynthetic process / receptor catabolic process / Synthesis and processing of ENV and VPU / CD4 receptor binding / Integration of viral DNA into host genomic DNA / Autointegration results in viral DNA circles / Minus-strand DNA synthesis / Plus-strand DNA synthesis / 2-LTR circle formation / Uncoating of the HIV Virion / virion assembly / Vpr-mediated nuclear import of PICs / Early Phase of HIV Life Cycle / Integration of provirus / APOBEC3G mediated resistance to HIV-1 infection / viral release from host cell / host cell membrane / Binding and entry of HIV virion / monoatomic cation channel activity / viral life cycle / Vpu mediated degradation of CD4 / Assembly Of The HIV Virion / Budding and maturation of HIV virion / establishment of integrated proviral latency / suppression by virus of host tetherin activity / membrane => GO:0016020 / viral protein processing / symbiont-mediated suppression of host type I interferon-mediated signaling pathway / fusion of virus membrane with host plasma membrane / membrane Similarity search - Function
Method: simulated annealing / Software ordinal: 1 Details: THE ANI COORDINATES HAVE BEEN INCLUDED IN THE RESTRAINT FILE. THE ANI Z AXIS SPECIFIES THE DIRECTION OF THE NORMAL TO THE PLANE OF THE LIPID BILAYER MEMBRANE.
NMR representative
Selection criteria: lowest energy
NMR ensemble
Conformer selection criteria: structures with the lowest energy Conformers calculated total number: 100 / Conformers submitted total number: 1
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