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Yorodumi- PDB-2mty: 3D structure determination of STARP peptides implicated in P. fal... -
+Open data
-Basic information
Entry | Database: PDB / ID: 2mty | ||||||
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Title | 3D structure determination of STARP peptides implicated in P. falciparum Invasion of hepatic cells | ||||||
Components | STARP antigen | ||||||
Keywords | PEPTIDE BINDING / STARP / Sporozoite / Malaria Vaccine | ||||||
Function / homology | STARP antigen Function and homology information | ||||||
Biological species | Plasmodium falciparum (malaria parasite P. falciparum) | ||||||
Method | SOLUTION NMR / distance geometry, simulated annealing | ||||||
Model details | lowest energy, model34 | ||||||
Authors | Bermudez, A. / Alba, M.P. / Vanegas, M. / Patarroyo, M.E. | ||||||
Citation | Journal: Vaccine / Year: 2010 Title: 3D structure determination of STARP peptides implicated in P. falciparum invasion of hepatic cells. Authors: Bermudez, A. / Alba, M.P. / Vanegas, M. / Patarroyo, M.E. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 2mty.cif.gz | 14 KB | Display | PDBx/mmCIF format |
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PDB format | pdb2mty.ent.gz | 8.1 KB | Display | PDB format |
PDBx/mmJSON format | 2mty.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 2mty_validation.pdf.gz | 426.6 KB | Display | wwPDB validaton report |
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Full document | 2mty_full_validation.pdf.gz | 430.3 KB | Display | |
Data in XML | 2mty_validation.xml.gz | 5.6 KB | Display | |
Data in CIF | 2mty_validation.cif.gz | 4.7 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/mt/2mty ftp://data.pdbj.org/pub/pdb/validation_reports/mt/2mty | HTTPS FTP |
-Related structure data
-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: Protein/peptide | Mass: 2332.594 Da / Num. of mol.: 1 / Fragment: UNP residues 41-60 / Source method: obtained synthetically Source: (synth.) Plasmodium falciparum (malaria parasite P. falciparum) References: UniProt: Q9U3Y8 |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||
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NMR experiment |
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-Sample preparation
Details | Contents: 8 mM protein, trifluoroethanol/water / Solvent system: trifluoroethanol/water |
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Sample | Conc.: 8 mM / Component: entity-1 |
Sample conditions | pH: 3.9 / Pressure: ambient / Temperature: 295 K |
-NMR measurement
NMR spectrometer | Type: Bruker DRX / Manufacturer: Bruker / Model: DRX / Field strength: 600 MHz |
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-Processing
NMR software |
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Refinement | Method: distance geometry, simulated annealing / Software ordinal: 1 | |||||||||
NMR representative | Selection criteria: lowest energy | |||||||||
NMR ensemble | Conformer selection criteria: structures with the lowest energy Conformers calculated total number: 50 / Conformers submitted total number: 1 / Representative conformer: 34 |