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Yorodumi- PDB-2mn8: NMR structure of a peptoid analogue of maculatin G15 containing c... -
+Open data
-Basic information
Entry | Database: PDB / ID: 2mn8 | ||||||
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Title | NMR structure of a peptoid analogue of maculatin G15 containing cis-Nleu at position 13 | ||||||
Components | maculatin G15 | ||||||
Keywords | ANTIMICROBIAL PROTEIN / peptoid / N-substituted glycine / maculatin / antimicrobial peptide | ||||||
Function / homology | defense response to bacterium / extracellular region / Maculatin-1.1 Function and homology information | ||||||
Biological species | Litoria genimaculata (brown-spotted treefrog) | ||||||
Method | SOLUTION NMR / torsion angle dynamics | ||||||
Model details | fewest violations, model1 | ||||||
Authors | Uggerhoej, L.E. / Guentert, P. / Wimmer, R. | ||||||
Citation | Journal: Febs Lett. / Year: 2014 Title: Structural features of peptoid-peptide hybrids in lipid-water interfaces. Authors: Uggerhj, L.E. / Munk, J.K. / Hansen, P.R. / Guntert, P. / Wimmer, R. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 2mn8.cif.gz | 131.1 KB | Display | PDBx/mmCIF format |
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PDB format | pdb2mn8.ent.gz | 105.8 KB | Display | PDB format |
PDBx/mmJSON format | 2mn8.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/mn/2mn8 ftp://data.pdbj.org/pub/pdb/validation_reports/mn/2mn8 | HTTPS FTP |
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-Related structure data
Related structure data | 2mmjC 2mn9C C: citing same article (ref.) |
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Similar structure data | |
Other databases |
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-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: Protein/peptide | Mass: 2121.526 Da / Num. of mol.: 1 / Source method: obtained synthetically / Details: The peptide was chemically synthesized. Source: (synth.) Litoria genimaculata (brown-spotted treefrog) References: UniProt: P82066*PLUS |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||||||
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NMR experiment |
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-Sample preparation
Details | Contents: 3 mM entity_1-1, 2 mM sodium azide-2, 150 mM [U-2H] SDS-3, 10 mM potassium phosphate-4, 95% H2O/5% D2O Solvent system: 95% H2O/5% D2O | ||||||||||||||||||||
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Sample |
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Sample conditions | pH: 6.5 / Pressure: ambient / Temperature: 310.1 K |
-NMR measurement
NMR spectrometer |
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-Processing
NMR software |
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Refinement | Method: torsion angle dynamics / Software ordinal: 1 | ||||||||||||||||||||||||||||||||||||
NMR constraints | NOE constraints total: 155 / NOE intraresidue total count: 80 / NOE long range total count: 0 / NOE medium range total count: 24 / NOE sequential total count: 51 / Protein chi angle constraints total count: 0 / Protein other angle constraints total count: 1 / Protein phi angle constraints total count: 16 / Protein psi angle constraints total count: 16 | ||||||||||||||||||||||||||||||||||||
NMR representative | Selection criteria: fewest violations | ||||||||||||||||||||||||||||||||||||
NMR ensemble | Conformer selection criteria: target function / Conformers calculated total number: 100 / Conformers submitted total number: 20 / Maximum torsion angle constraint violation: 5 ° / Maximum upper distance constraint violation: 0.1 Å / Representative conformer: 1 |