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Yorodumi- PDB-2mm6: solution structure of alpha amylase inhibitor peptide aS1 from Al... -
+Open data
-Basic information
Entry | Database: PDB / ID: 2mm6 | ||||||
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Title | solution structure of alpha amylase inhibitor peptide aS1 from Allatide scholaris | ||||||
Components | Alpha amylase Alstotide S1 | ||||||
Keywords | HYDROLASE INHIBITOR | ||||||
Function / homology | Alpha amylase Alstotide S1 Function and homology information | ||||||
Biological species | Alstonia scholaris (milky pine) | ||||||
Method | SOLUTION NMR / simulated annealing | ||||||
Model details | fewest violations, model1 | ||||||
Authors | Wang, S. / Nguyen, Q. / Tam, J. | ||||||
Citation | Journal: To be Published Title: Solution structure of alpha-amylase inhibitor peptide aS1 from Allatide scholaris Authors: Wang, S. / Nguyen, Q. / Tam, J. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 2mm6.cif.gz | 104.4 KB | Display | PDBx/mmCIF format |
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PDB format | pdb2mm6.ent.gz | 87.6 KB | Display | PDB format |
PDBx/mmJSON format | 2mm6.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 2mm6_validation.pdf.gz | 443.2 KB | Display | wwPDB validaton report |
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Full document | 2mm6_full_validation.pdf.gz | 495 KB | Display | |
Data in XML | 2mm6_validation.xml.gz | 10.7 KB | Display | |
Data in CIF | 2mm6_validation.cif.gz | 13.1 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/mm/2mm6 ftp://data.pdbj.org/pub/pdb/validation_reports/mm/2mm6 | HTTPS FTP |
-Related structure data
Related structure data | |
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Similar structure data | |
Other databases |
-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: Protein/peptide | Mass: 3376.973 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Details: plants / Source: (natural) Alstonia scholaris (milky pine) / References: UniProt: A0A0S0ZR07 |
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Sequence details | THE SEQUENCE OF THIS PROTEIN WAS NOT AVAILABLE AT THE UNIPROT KNOWLEDGEBASE DATABASE (UNIPROTKB) AT ...THE SEQUENCE OF THIS PROTEIN WAS NOT AVAILABLE AT THE UNIPROT KNOWLEDGEB |
-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||
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NMR experiment |
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-Sample preparation
Details | Contents: 1mM aS1-1, 95% H2O-2, 5% D2O-3, 95% H2O/5% D2O / Solvent system: 95% H2O/5% D2O | ||||||||||||
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Sample |
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Sample conditions | Ionic strength: 0 / pH: 3.2 / Pressure: ambient atm / Temperature: 298 K |
-NMR measurement
NMR spectrometer | Type: Bruker Avance / Manufacturer: Bruker / Model: AVANCE / Field strength: 600 MHz |
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-Processing
NMR software |
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Refinement | Method: simulated annealing / Software ordinal: 1 | ||||||||||||||||||||||||
NMR representative | Selection criteria: fewest violations | ||||||||||||||||||||||||
NMR ensemble | Conformer selection criteria: structures with the least restraint violations Conformers calculated total number: 100 / Conformers submitted total number: 10 / Representative conformer: 1 |