+Open data
-Basic information
Entry | Database: PDB / ID: 2mia | ||||||
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Title | Solution structure of allatide C4, conformation 2 | ||||||
Components | alpha amylase inhibitor | ||||||
Keywords | HYDROLASE INHIBITOR | ||||||
Function / homology | Alpha amylase inhibitor allatide C4 Function and homology information | ||||||
Biological species | Allamanda cathartica (copa de oro) | ||||||
Method | SOLUTION NMR / torsion angle dynamics | ||||||
Model details | closest to the average, model1 | ||||||
Authors | Bai, Y. / Pervushin, K. | ||||||
Citation | Journal: To be Published Title: Allotides: Proline-rich Cystine Knot alpha-Amylase Inhibitors from the Allamanda cathartica Authors: Nguyen, P. / Luu, T. / Bai, Y. / Nguyen, G. / Pervushin, K. / Tam, J. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 2mia.cif.gz | 199 KB | Display | PDBx/mmCIF format |
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PDB format | pdb2mia.ent.gz | 174.1 KB | Display | PDB format |
PDBx/mmJSON format | 2mia.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 2mia_validation.pdf.gz | 365.4 KB | Display | wwPDB validaton report |
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Full document | 2mia_full_validation.pdf.gz | 440.8 KB | Display | |
Data in XML | 2mia_validation.xml.gz | 9.7 KB | Display | |
Data in CIF | 2mia_validation.cif.gz | 15.5 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/mi/2mia ftp://data.pdbj.org/pub/pdb/validation_reports/mi/2mia | HTTPS FTP |
-Related structure data
-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: Protein/peptide | Mass: 3299.949 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) Allamanda cathartica (copa de oro) / References: UniProt: U5JE23*PLUS |
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Sequence details | A SEQUENCE REFERENCE FOR THIS PROTEIN DOES NOT CURRENTLY EXIST. |
-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||
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NMR experiment |
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-Sample preparation
Details | Contents: 0.5-1 mM entity-1, 90% H2O/10% D2O / Solvent system: 90% H2O/10% D2O |
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Sample | Units: mM / Component: entity-1 / Conc. range: 0.5-1 |
Sample conditions | pH: 6 / Pressure: ambient / Temperature: 298 K |
-NMR measurement
NMR spectrometer | Type: Bruker Avance / Manufacturer: Bruker / Model: Avance / Field strength: 700 MHz |
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-Processing
NMR software |
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Refinement | Method: torsion angle dynamics / Software ordinal: 1 | |||||||||
NMR representative | Selection criteria: closest to the average | |||||||||
NMR ensemble | Conformer selection criteria: back calculated data agree with experimental NOESY spectrum Conformers calculated total number: 20 / Conformers submitted total number: 20 / Representative conformer: 3 |