[English] 日本語
Yorodumi- PDB-2mb5: HYDRATION IN PROTEIN CRYSTALS. A NEUTRON DIFFRACTION ANALYSIS OF ... -
+Open data
-Basic information
Entry | Database: PDB / ID: 2mb5 | |||||||||
---|---|---|---|---|---|---|---|---|---|---|
Title | HYDRATION IN PROTEIN CRYSTALS. A NEUTRON DIFFRACTION ANALYSIS OF CARBONMONOXYMYOGLOBIN | |||||||||
Components | MYOGLOBIN | |||||||||
Keywords | OXYGEN STORAGE | |||||||||
Function / homology | Function and homology information nitrite reductase activity / Oxidoreductases; Acting on other nitrogenous compounds as donors / sarcoplasm / Oxidoreductases; Acting on a peroxide as acceptor; Peroxidases / removal of superoxide radicals / oxygen carrier activity / oxygen binding / peroxidase activity / heme binding / extracellular exosome / metal ion binding Similarity search - Function | |||||||||
Biological species | Physeter catodon (sperm whale) | |||||||||
Method | NEUTRON DIFFRACTION / Resolution: 1.8 Å | |||||||||
Authors | Schoenborn, B.P. / Cheng, X. | |||||||||
Citation | Journal: Acta Crystallogr.,Sect.B / Year: 1990 Title: Hydration in Protein Crystals. A Neutron Diffraction Analysis of Carbonmonoxymyoglobin Authors: Cheng, X. / Schoenborn, B.P. #1: Journal: J.Mol.Biol. / Year: 1981 Title: Real Space Refinement of Neutron Diffraction Data from Sperm Whale Carbonmonoxymyoglobin Authors: Hanson, J.C. / Schoenborn, B.P. #2: Journal: Acs Symp.Ser. / Year: 1980 Title: The Determination of Structural Water by Neutron Protein Crystallography. An Analysis of the Carbon Monoxide Myoglobin Water Structure Authors: Schoenborn, B.P. / Hanson, J.C. #3: Journal: Acta Crystallogr.,Sect.A (Supplement) / Year: 1975 Title: Neutron Diffraction Analysis and Real Space Refinement of met and Carbon Monoxide Myoglobin Authors: Schoenborn, B.P. / Norvell, J.C. #4: Journal: Brookhaven Symposia in Biology / Year: 1975 Title: Neutron Diffraction Analysis of Metmyoglobin Authors: Schoenborn, B.P. / Diamond, R. #5: Journal: Science / Year: 1975 Title: Neutron Diffraction Analysis of Myoglobin. Structure of the Carbon Monoxide Derivative Authors: Norvell, J.C. / Nunes, A.C. / Schoenborn, B.P. #6: Journal: Cold Spring Harbor Symp.Quant.Biol. / Year: 1972 Title: A Neutron Diffraction Analysis of Myoglobin. III. Hydrogen-Deuterium Bonding in Side Chains Authors: Schoenborn, B.P. #7: Journal: Nature / Year: 1969 Title: Neutron Diffraction Analysis of Myoglobin Authors: Schoenborn, B.P. | |||||||||
History |
|
-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
---|
-Downloads & links
-Download
PDBx/mmCIF format | 2mb5.cif.gz | 79.2 KB | Display | PDBx/mmCIF format |
---|---|---|---|---|
PDB format | pdb2mb5.ent.gz | 62.4 KB | Display | PDB format |
PDBx/mmJSON format | 2mb5.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 2mb5_validation.pdf.gz | 475.6 KB | Display | wwPDB validaton report |
---|---|---|---|---|
Full document | 2mb5_full_validation.pdf.gz | 482.6 KB | Display | |
Data in XML | 2mb5_validation.xml.gz | 6.3 KB | Display | |
Data in CIF | 2mb5_validation.cif.gz | 8.8 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/mb/2mb5 ftp://data.pdbj.org/pub/pdb/validation_reports/mb/2mb5 | HTTPS FTP |
-Related structure data
Similar structure data |
---|
-Links
-Assembly
Deposited unit |
| ||||||||
---|---|---|---|---|---|---|---|---|---|
1 |
| ||||||||
Unit cell |
|
-Components
-Protein , 1 types, 1 molecules A
#1: Protein | Mass: 17234.951 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Physeter catodon (sperm whale) / References: UniProt: P02185 |
---|
-Non-polymers , 5 types, 97 molecules
#2: Chemical | ChemComp-SO4 / | ||||||
---|---|---|---|---|---|---|---|
#3: Chemical | ChemComp-ND4 / #4: Chemical | ChemComp-HEM / | #5: Chemical | ChemComp-CMO / | #6: Chemical | ChemComp-DOD / | |
-Experimental details
-Experiment
Experiment | Method: NEUTRON DIFFRACTION |
---|
-Sample preparation
Crystal grow | *PLUS Method: unknown |
---|
-Processing
Software | Name: PROLSQ / Classification: refinement | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Refinement | Highest resolution: 1.8 Å | ||||||||||||
Refinement step | Cycle: LAST / Highest resolution: 1.8 Å
| ||||||||||||
Refine LS restraints |
|