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- PDB-2m6q: Refined Solution NMR Structure of Staphylococcus aureus protein S... -
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Open data
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Basic information
Entry | Database: PDB / ID: 2m6q | ||||||
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Title | Refined Solution NMR Structure of Staphylococcus aureus protein SAV1430. Northeast Strucutral Genomics Consortium Target ZR18 | ||||||
![]() | SAV1430 | ||||||
![]() | UNKNOWN FUNCTION / Structural Genomics / NORTHEAST STRUCTURAL GENOMICS CONSORTIUM / NESG / PSI-Biology / Protein Structure Initiative | ||||||
Function / homology | ![]() Scaffold protein Nfu/NifU, N-terminal domain / Scaffold protein Nfu/NifU, N-terminal / Scaffold protein Nfu/NifU, N-terminal domain superfamily / Scaffold protein Nfu/NifU N terminal / Scaffold protein Nfu/NifU N terminal / Ribosomal Protein S8; Chain: A, domain 1 / 2-Layer Sandwich / Alpha Beta Similarity search - Domain/homology | ||||||
Biological species | ![]() ![]() | ||||||
Method | SOLUTION NMR / simulated annealing | ||||||
Model details | lowest energy, model1 | ||||||
![]() | Baran, M.C. / Aramini, J.M. / Huang, Y.J. / Xiao, R. / Acton, T.B. / Shih, L. / Montelione, G.T. / Northeast Structural Genomics Consortium (NESG) | ||||||
![]() | ![]() Title: PDBStat: a universal restraint converter and restraint analysis software package for protein NMR. Authors: Tejero, R. / Snyder, D. / Mao, B. / Aramini, J.M. / Montelione, G.T. #1: Journal: J.Am.Chem.Soc. / Year: 2006 Title: FAST-NMR: functional annotation screening technology using NMR spectroscopy. Authors: Mercier, K.A. / Baran, M. / Ramanathan, V. / Revesz, P. / Xiao, R. / Montelione, G.T. / Powers, R. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 287.6 KB | Display | ![]() |
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PDB format | ![]() | 237.9 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
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-Validation report
Summary document | ![]() | 550.4 KB | Display | ![]() |
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Full document | ![]() | 628.2 KB | Display | |
Data in XML | ![]() | 26.9 KB | Display | |
Data in CIF | ![]() | 33.2 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 2m8wC ![]() 2m8xC C: citing same article ( |
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Similar structure data | |
Other databases |
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Links
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Assembly
Deposited unit | ![]()
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NMR ensembles |
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Components
#1: Protein | Mass: 10487.755 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() Strain: Mu50 / Gene: SAV1430 / Plasmid: ZR18-21 / Production host: ![]() ![]() |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR / Details: Refinement of PDB 1PQX | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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NMR experiment |
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Sample preparation
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Sample |
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Sample conditions | Ionic strength: 0.1 / pH: 6.5 / Temperature: 298 K |
-NMR measurement
NMR spectrometer |
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Processing
NMR software |
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Refinement | Method: simulated annealing / Software ordinal: 1 Details: Refinement of PDB 1PQX coordinates (10 models) using CNS in explicit water. The original 1PQX models were generated by AutoStructure. | ||||||||||||||||||||||||||||||||||||||||||||
NMR representative | Selection criteria: lowest energy | ||||||||||||||||||||||||||||||||||||||||||||
NMR ensemble | Conformer selection criteria: structures with the lowest energy Conformers calculated total number: 56 / Conformers submitted total number: 10 |