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Yorodumi- PDB-2lzx: Solution NMR structure of Asteropsin B from a marine sponge Aster... -
+Open data
-Basic information
Entry | Database: PDB / ID: 2lzx | |||||||||
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Title | Solution NMR structure of Asteropsin B from a marine sponge Asteropus sp. | |||||||||
Components | Asteropsin B | |||||||||
Keywords | TOXIN / KNOTTIN / SPONGE | |||||||||
Biological species | Asteropus (invertebrata) | |||||||||
Method | SOLUTION NMR / simulated annealing | |||||||||
Authors | Li, H. / Bowling, J.J. / Hamann, M.T. / Jung, J.H. | |||||||||
Citation | Journal: To be Published Title: Sponge Derived Linear Knottins as a Novel Scaffold for Oral Peptide Drug Administration Authors: Li, H. / Bowling, J.J. / Su, M. / Hong, J. / Lee, B. / Kang, H. / Hamann, M.T. / Jung, J.H. | |||||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 2lzx.cif.gz | 194.6 KB | Display | PDBx/mmCIF format |
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PDB format | pdb2lzx.ent.gz | 164.1 KB | Display | PDB format |
PDBx/mmJSON format | 2lzx.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 2lzx_validation.pdf.gz | 433.8 KB | Display | wwPDB validaton report |
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Full document | 2lzx_full_validation.pdf.gz | 483.9 KB | Display | |
Data in XML | 2lzx_validation.xml.gz | 11.9 KB | Display | |
Data in CIF | 2lzx_validation.cif.gz | 20.6 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/lz/2lzx ftp://data.pdbj.org/pub/pdb/validation_reports/lz/2lzx | HTTPS FTP |
-Related structure data
-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: Protein/peptide | Mass: 3905.369 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) Asteropus (invertebrata) |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||
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NMR experiment |
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-Sample preparation
Details | Contents: 10 mM ABU8-2, DMSO-d6 / Solvent system: DMSO-d6 |
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Sample | Conc.: 10 mM / Component: ABU8-2-1 |
Sample conditions | pH: 7 / Pressure: ambient / Temperature: 298 K |
-NMR measurement
NMR spectrometer |
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-Processing
NMR software |
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Refinement | Method: simulated annealing / Software ordinal: 1 | ||||||||||||
NMR representative | Selection criteria: lowest energy | ||||||||||||
NMR ensemble | Conformer selection criteria: structures with the lowest energy Conformers calculated total number: 200 / Conformers submitted total number: 20 |