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Yorodumi- PDB-2lwh: NMR Structure of the Self-Complementary 10 mer DNA Duplex 5'-GGAT... -
+Open data
-Basic information
Entry | Database: PDB / ID: 2lwh | |||||||||||||||||||||||||
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Title | NMR Structure of the Self-Complementary 10 mer DNA Duplex 5'-GGATATATCC-3' in Complex with Netropsin | |||||||||||||||||||||||||
Components | DNA (5'-D(*Keywords | DNA / microstructure / Induced DNA binding / DNA minor groove variations | Function / homology | NETROPSIN / DNA | Function and homology information Method | SOLUTION NMR / simulated annealing, molecular dynamics | Model details | minimized average structure, model 1 | Model type details | minimized average | Authors | Rettig, M. / Germann, M.W. / Wilson, W. / Wang, S. | Citation | Journal: Chembiochem / Year: 2013 | Title: Molecular basis for sequence-dependent induced DNA bending. Authors: Rettig, M. / Germann, M.W. / Wang, S. / Wilson, W.D. History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 2lwh.cif.gz | 155 KB | Display | PDBx/mmCIF format |
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PDB format | pdb2lwh.ent.gz | 125.8 KB | Display | PDB format |
PDBx/mmJSON format | 2lwh.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 2lwh_validation.pdf.gz | 405.9 KB | Display | wwPDB validaton report |
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Full document | 2lwh_full_validation.pdf.gz | 506.1 KB | Display | |
Data in XML | 2lwh_validation.xml.gz | 8.3 KB | Display | |
Data in CIF | 2lwh_validation.cif.gz | 12.8 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/lw/2lwh ftp://data.pdbj.org/pub/pdb/validation_reports/lw/2lwh | HTTPS FTP |
-Related structure data
-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: DNA chain | Mass: 3044.017 Da / Num. of mol.: 2 / Source method: obtained synthetically #2: Chemical | ChemComp-NT / | |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||||||||||
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NMR experiment |
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-Sample preparation
Details |
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Sample |
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Sample conditions | pH: 7 / Pressure: ambient / Temperature: 278 K |
-NMR measurement
NMR spectrometer |
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-Processing
NMR software |
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Refinement | Method: simulated annealing, molecular dynamics / Software ordinal: 1 | ||||||||||||
NMR representative | Selection criteria: minimized average structure | ||||||||||||
NMR ensemble | Conformer selection criteria: target function / Conformers calculated total number: 9500 / Conformers submitted total number: 11 |