[English] 日本語
![](img/lk-miru.gif)
- PDB-2lwh: NMR Structure of the Self-Complementary 10 mer DNA Duplex 5'-GGAT... -
+
Open data
-
Basic information
Entry | Database: PDB / ID: 2lwh | |||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Title | NMR Structure of the Self-Complementary 10 mer DNA Duplex 5'-GGATATATCC-3' in Complex with Netropsin | |||||||||||||||||||||||||
![]() | DNA (5'-D(*![]() DNA / microstructure / Induced DNA binding / DNA minor groove variations | Function / homology | NETROPSIN / DNA | ![]() Method | SOLUTION NMR / simulated annealing, molecular dynamics | Model details | minimized average structure, model 1 | Model type details | minimized average | ![]() Rettig, M. / Germann, M.W. / Wilson, W. / Wang, S. | ![]() ![]() Title: Molecular basis for sequence-dependent induced DNA bending. Authors: Rettig, M. / Germann, M.W. / Wang, S. / Wilson, W.D. History |
|
-
Structure visualization
Structure viewer | Molecule: ![]() ![]() |
---|
-
Downloads & links
-
Download
PDBx/mmCIF format | ![]() | 155 KB | Display | ![]() |
---|---|---|---|---|
PDB format | ![]() | 125.8 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 405.9 KB | Display | ![]() |
---|---|---|---|---|
Full document | ![]() | 506.1 KB | Display | |
Data in XML | ![]() | 8.3 KB | Display | |
Data in CIF | ![]() | 12.8 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
-
Links
-
Assembly
Deposited unit | ![]()
| |||||||||
---|---|---|---|---|---|---|---|---|---|---|
1 |
| |||||||||
NMR ensembles |
|
-
Components
#1: DNA chain | Mass: 3044.017 Da / Num. of mol.: 2 / Source method: obtained synthetically #2: Chemical | ChemComp-NT / | |
---|
-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
NMR experiment |
|
-
Sample preparation
Details |
| ||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample |
| ||||||||||||||||||||||||
Sample conditions | pH: 7 / Pressure: ambient / Temperature: 278 K |
-NMR measurement
NMR spectrometer |
|
---|
-
Processing
NMR software |
| ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Refinement | Method: simulated annealing, molecular dynamics / Software ordinal: 1 | ||||||||||||
NMR representative | Selection criteria: minimized average structure | ||||||||||||
NMR ensemble | Conformer selection criteria: target function / Conformers calculated total number: 9500 / Conformers submitted total number: 11 |