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- PDB-2lfb: HOMEODOMAIN FROM RAT LIVER LFB1/HNF1 TRANSCRIPTION FACTOR, NMR, 2... -
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Open data
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Basic information
Entry | Database: PDB / ID: 2lfb | ||||||
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Title | HOMEODOMAIN FROM RAT LIVER LFB1/HNF1 TRANSCRIPTION FACTOR, NMR, 20 STRUCTURES | ||||||
![]() | LFB1/HNF1 TRANSCRIPTION FACTOR | ||||||
![]() | DNA-BINDING / TRANSCRIPTION FACTOR / LFB1/HNF1 / HELIX-TURN-HELIX / DNA-BINDING DOMAIN | ||||||
Function / homology | ![]() paraxial mesoderm formation / cellular response to rapamycin / apoptotic nuclear changes / regulation of NADP metabolic process / renal glucose absorption / regulation of hormone secretion / reproductive structure development / cellular response to L-leucine / bile acid biosynthetic process / reverse cholesterol transport ...paraxial mesoderm formation / cellular response to rapamycin / apoptotic nuclear changes / regulation of NADP metabolic process / renal glucose absorption / regulation of hormone secretion / reproductive structure development / cellular response to L-leucine / bile acid biosynthetic process / reverse cholesterol transport / pronucleus / bile acid and bile salt transport / regulation of Wnt signaling pathway / pancreas development / negative regulation of miRNA processing / positive regulation of mitochondrial membrane potential / embryonic limb morphogenesis / insulin secretion / heme biosynthetic process / positive regulation of ATP biosynthetic process / negative regulation of peptidyl-threonine phosphorylation / glucose import / blastocyst development / photoreceptor outer segment / positive regulation of transcription initiation by RNA polymerase II / fatty acid transport / response to glucose / bone resorption / cholesterol metabolic process / liver development / transcription coregulator binding / cellular response to glucose stimulus / placenta development / protein localization / positive regulation of insulin secretion / transcription coactivator binding / fatty acid biosynthetic process / glucose homeostasis / double-stranded DNA binding / DNA-binding transcription activator activity, RNA polymerase II-specific / response to oxidative stress / sequence-specific DNA binding / transcription regulator complex / transcription by RNA polymerase II / positive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction / protein dimerization activity / transcription cis-regulatory region binding / DNA-binding transcription factor activity, RNA polymerase II-specific / chromatin remodeling / positive regulation of protein phosphorylation / RNA polymerase II cis-regulatory region sequence-specific DNA binding / DNA-binding transcription factor activity / chromatin binding / positive regulation of gene expression / regulation of DNA-templated transcription / chromatin / regulation of transcription by RNA polymerase II / negative regulation of apoptotic process / positive regulation of DNA-templated transcription / negative regulation of transcription by RNA polymerase II / positive regulation of transcription by RNA polymerase II / protein-containing complex / DNA binding / identical protein binding / nucleus / cytoplasm Similarity search - Function | ||||||
Biological species | ![]() ![]() | ||||||
Method | SOLUTION NMR / DISTANCE GEOMETRY WITH DIANA, ENERGY MINIMIZATION WITH OPAL | ||||||
![]() | Schott, O. / Billeter, M. / Leiting, B. / Wider, G. / Wuthrich, K. | ||||||
![]() | ![]() Title: The NMR solution structure of the non-classical homeodomain from the rat liver LFB1/HNF1 transcription factor. Authors: Schott, O. / Billeter, M. / Leiting, B. / Wider, G. / Wuthrich, K. #1: ![]() Title: The Three-Dimensional NMR-Solution Structure of the Polypeptide Fragment 195-286 of the LFB1/HNF1 Transcription Factor from Rat Liver Comprises a Nonclassical Homeodomain Authors: Leiting, B. / De Francesco, R. / Tomei, L. / Cortese, R. / Otting, G. / Wuthrich, K. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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PDBx/mmCIF format | ![]() | 643 KB | Display | ![]() |
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PDB format | ![]() | 536.4 KB | Display | ![]() |
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-Validation report
Summary document | ![]() | 363.1 KB | Display | ![]() |
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Full document | ![]() | 495 KB | Display | |
Data in XML | ![]() | 30.1 KB | Display | |
Data in CIF | ![]() | 51.5 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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NMR ensembles |
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Components
#1: Protein | Mass: 11808.395 Da / Num. of mol.: 1 / Fragment: DNA-BINDING DOMAIN, RESIDUES 0 - 99, HOMEODOMAIN / Mutation: INS(MET0) Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() ![]() |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||
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NMR experiment |
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Sample preparation
Sample conditions | pH: 4.6 / Temperature: 295 K |
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Crystal grow | *PLUS Method: other / Details: NMR |
-NMR measurement
NMR spectrometer | Type: Bruker AMX 600 / Manufacturer: Bruker / Model: AMX 600 / Field strength: 600 MHz |
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Processing
NMR software |
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Refinement | Method: DISTANCE GEOMETRY WITH DIANA, ENERGY MINIMIZATION WITH OPAL Software ordinal: 1 | ||||||||||||||||||||||||
NMR ensemble | Conformer selection criteria: BEST TARGET FUNCTION / Conformers calculated total number: 50 / Conformers submitted total number: 20 |