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- PDB-2lee: Unique structural features of interconverting monomeric and dimer... -
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Basic information
Entry | Database: PDB / ID: 2lee | ||||||||||||||||||||
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Title | Unique structural features of interconverting monomeric and dimeric G-quadruplexes adopted by a sequence from intron of N-myc gene | ||||||||||||||||||||
![]() | DNA (5'-D(*![]() DNA / G-quadruplex / monomer-dimer equilibrium / N-myc / intron | Function / homology | DNA / DNA (> 10) | ![]() Method | SOLUTION NMR / simulated annealing | Model details | lowest energy, model 1 | ![]() Trajkovski, M. / Plavec, J. / Webba da Silva, M. | ![]() ![]() Title: Unique Structural Features of Interconverting Monomeric and Dimeric G-Quadruplexes Adopted by a Sequence from the Intron of the N-myc Gene. Authors: Trajkovski, M. / Webba da Silva, M. / Plavec, J. History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 126.2 KB | Display | ![]() |
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PDB format | ![]() | 103.1 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
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-Validation report
Summary document | ![]() | 385.8 KB | Display | ![]() |
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Full document | ![]() | 444.4 KB | Display | |
Data in XML | ![]() | 9.4 KB | Display | |
Data in CIF | ![]() | 11.7 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
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Links
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Assembly
Deposited unit | ![]()
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NMR ensembles |
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Components
#1: DNA chain | Mass: 6064.922 Da / Num. of mol.: 1 / Source method: obtained synthetically |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||||||
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NMR experiment |
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Sample preparation
Details | Contents: 0.4-6.6 mM DNA (5'-D(*TP*AP*GP*GP*GP*CP*GP*GP*GP*AP*GP*GP*GP*AP*GP*GP*GP*AP*A)-3'), 90% H2O/10% D2O Solvent system: 90% H2O/10% D2O |
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Sample | Units: mM Component: DNA (5'-D(*TP*AP*GP*GP*GP*CP*GP*GP*GP*AP*GP*GP*GP*AP*GP*GP*GP*AP*A)-3')-1 Conc. range: 0.4-6.6 |
Sample conditions | Ionic strength: 120 / pH: 6.5 / Pressure: ambient / Temperature: 298.15 K |
-NMR measurement
NMR spectrometer |
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Processing
NMR software |
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Refinement | Method: simulated annealing / Software ordinal: 1 | ||||||||||||
NMR representative | Selection criteria: lowest energy | ||||||||||||
NMR ensemble | Conformer selection criteria: structures with the lowest energy Conformers calculated total number: 50 / Conformers submitted total number: 10 |