登録情報 | データベース: PDB / ID: 2ld5 |
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タイトル | Solution NMR-derived complex structure of Hoxa13 DNA binding domain bound to DNA |
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要素 | - DNA (5'-D(*CP*AP*AP*AP*TP*AP*AP*AP*AP*TP*C)-3')
- DNA (5'-D(P*GP*AP*TP*TP*TP*TP*AP*TP*TP*TP*G)-3')
- Homeobox protein Hox-A13
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キーワード | TRANSCRIPTION/DNA / TRANSCRIPTION-DNA complex |
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機能・相同性 | 機能・相同性情報
endothelial cell fate specification / positive regulation of mesenchymal cell apoptotic process / regulation of BMP signaling pathway / branching involved in prostate gland morphogenesis / endothelial cell morphogenesis / male genitalia development / tissue homeostasis / embryonic forelimb morphogenesis / intermediate filament cytoskeleton / ventricular septum development ...endothelial cell fate specification / positive regulation of mesenchymal cell apoptotic process / regulation of BMP signaling pathway / branching involved in prostate gland morphogenesis / endothelial cell morphogenesis / male genitalia development / tissue homeostasis / embryonic forelimb morphogenesis / intermediate filament cytoskeleton / ventricular septum development / artery morphogenesis / inner ear development / anatomical structure morphogenesis / vasculogenesis / cis-regulatory region sequence-specific DNA binding / positive regulation of mitotic nuclear division / animal organ morphogenesis / sequence-specific double-stranded DNA binding / DNA-binding transcription activator activity, RNA polymerase II-specific / sequence-specific DNA binding / transcription cis-regulatory region binding / RNA polymerase II cis-regulatory region sequence-specific DNA binding / DNA-binding transcription factor activity / positive regulation of transcription by RNA polymerase II / DNA binding / nucleoplasm / nucleus / cytosol類似検索 - 分子機能 Homeobox protein Hox1A3 N-terminal / Hox protein A13 N terminal / Homeobox, conserved site / 'Homeobox' domain signature. / Homeodomain / 'Homeobox' domain profile. / Homeodomain / Homeobox domain / Homeodomain-like / Homeobox-like domain superfamily ...Homeobox protein Hox1A3 N-terminal / Hox protein A13 N terminal / Homeobox, conserved site / 'Homeobox' domain signature. / Homeodomain / 'Homeobox' domain profile. / Homeodomain / Homeobox domain / Homeodomain-like / Homeobox-like domain superfamily / Arc Repressor Mutant, subunit A / Orthogonal Bundle / Mainly Alpha類似検索 - ドメイン・相同性 |
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生物種 | ![](img/tx_mammal.gif) Mus musculus (ハツカネズミ) |
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手法 | 溶液NMR / simulated annealing |
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Model details | lowest energy, model 1 |
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データ登録者 | Zhang, Y. |
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引用 | ジャーナル: Plos One / 年: 2011 タイトル: Structural basis for sequence specific DNA binding and protein dimerization of HOXA13. 著者: Zhang, Y. / Larsen, C.A. / Stadler, H.S. / Ames, J.B. |
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履歴 | 登録 | 2011年5月14日 | 登録サイト: BMRB / 処理サイト: RCSB |
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改定 1.0 | 2011年8月10日 | Provider: repository / タイプ: Initial release |
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改定 1.1 | 2012年3月28日 | Group: Database references |
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改定 1.2 | 2016年4月27日 | Group: Structure summary |
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改定 1.3 | 2024年5月1日 | Group: Data collection / Database references カテゴリ: chem_comp_atom / chem_comp_bond ...chem_comp_atom / chem_comp_bond / database_2 / pdbx_nmr_spectrometer / struct_ref_seq_dif Item: _database_2.pdbx_DOI / _database_2.pdbx_database_accession ..._database_2.pdbx_DOI / _database_2.pdbx_database_accession / _pdbx_nmr_spectrometer.model / _struct_ref_seq_dif.details |
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