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Yorodumi- PDB-2lcz: NMR Structure of the Complete Internal Fusion Loop from Ebolaviru... -
+Open data
-Basic information
Entry | Database: PDB / ID: 2lcz | ||||||
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Title | NMR Structure of the Complete Internal Fusion Loop from Ebolavirus GP2 at pH 7.0 | ||||||
Components | Virion spike glycoprotein | ||||||
Keywords | VIRAL PROTEIN | ||||||
Function / homology | Filoviruses glycoprotein, extracellular domain / Filoviruses glycoprotein / Filovirus glycoprotein / extracellular region / membrane / GP1,2 Function and homology information | ||||||
Biological species | Zaire ebolavirus | ||||||
Method | SOLUTION NMR / simulated annealing | ||||||
Model details | lowest energy, model 1 | ||||||
Authors | Gregory, S.M. / Harada, E. / Liang, B. / Tamm, L.K. | ||||||
Citation | Journal: Proc.Natl.Acad.Sci.USA / Year: 2011 Title: Structure and function of the complete internal fusion loop from Ebolavirus glycoprotein 2. Authors: Gregory, S.M. / Harada, E. / Liang, B. / Delos, S.E. / White, J.M. / Tamm, L.K. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 2lcz.cif.gz | 317.4 KB | Display | PDBx/mmCIF format |
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PDB format | pdb2lcz.ent.gz | 262.9 KB | Display | PDB format |
PDBx/mmJSON format | 2lcz.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 2lcz_validation.pdf.gz | 527.4 KB | Display | wwPDB validaton report |
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Full document | 2lcz_full_validation.pdf.gz | 737.1 KB | Display | |
Data in XML | 2lcz_validation.xml.gz | 43.3 KB | Display | |
Data in CIF | 2lcz_validation.cif.gz | 61.9 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/lc/2lcz ftp://data.pdbj.org/pub/pdb/validation_reports/lc/2lcz | HTTPS FTP |
-Related structure data
-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: Protein | Mass: 5947.692 Da / Num. of mol.: 1 / Fragment: sequence database residues 507-560 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Zaire ebolavirus / Gene: GP / Production host: Escherichia coli (E. coli) / References: UniProt: A9QPL9 |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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NMR experiment |
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-Sample preparation
Details |
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Sample |
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Sample conditions | Ionic strength: 50 / pH: 7.0 / Pressure: 1 atm / Temperature: 303 K |
-NMR measurement
NMR spectrometer |
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-Processing
NMR software | Name: CNS / Developer: Brunger A. T. et.al. / Classification: refinement |
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Refinement | Method: simulated annealing / Software ordinal: 1 |
NMR representative | Selection criteria: lowest energy |
NMR ensemble | Conformer selection criteria: 20 structures for lowest energy Conformers calculated total number: 200 / Conformers submitted total number: 20 |