+Open data
-Basic information
Entry | Database: PDB / ID: 2l5z | ||||||
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Title | NMR structure of the A730 loop of the Neurospora VS ribozyme | ||||||
Components | RNA (26-MER) | ||||||
Keywords | RNA / internal loop / VS ribozyme | ||||||
Function / homology | RNA / RNA (> 10) Function and homology information | ||||||
Biological species | Neurospora (fungus) | ||||||
Method | SOLUTION NMR / simulated annealing, molecular dynamics | ||||||
Model details | minimized average, model 1 | ||||||
Authors | Desjardins, G. / Bonneau, E. / Girard, N. / Boisbouvier, J. / Legault, P. | ||||||
Citation | Journal: Nucleic Acids Res. / Year: 2011 Title: NMR structure of the A730 loop of the Neurospora VS ribozyme: insights into the formation of the active site. Authors: Desjardins, G. / Bonneau, E. / Girard, N. / Boisbouvier, J. / Legault, P. #1: Journal: To be Published Title: NMR Structure of the A730 loop of the Neurospora VS Ribozyme: Insights into the Formation of the Active Site Authors: Desjardins, G. / Bonneau, E. / Girard, N. / Boisbouvier, J. / Legault, P. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 2l5z.cif.gz | 345.1 KB | Display | PDBx/mmCIF format |
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PDB format | pdb2l5z.ent.gz | 294.3 KB | Display | PDB format |
PDBx/mmJSON format | 2l5z.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 2l5z_validation.pdf.gz | 449.1 KB | Display | wwPDB validaton report |
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Full document | 2l5z_full_validation.pdf.gz | 601.3 KB | Display | |
Data in XML | 2l5z_validation.xml.gz | 19.5 KB | Display | |
Data in CIF | 2l5z_validation.cif.gz | 29.7 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/l5/2l5z ftp://data.pdbj.org/pub/pdb/validation_reports/l5/2l5z | HTTPS FTP |
-Related structure data
Similar structure data | |
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Other databases |
-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: RNA chain | Mass: 8421.106 Da / Num. of mol.: 1 / Fragment: A730 loop domain of the VS ribozyme / Source method: obtained synthetically / Source: (synth.) Neurospora (fungus) |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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NMR experiment |
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-Sample preparation
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Sample conditions |
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-NMR measurement
NMR spectrometer |
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-Processing
NMR software |
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Refinement | Method: simulated annealing, molecular dynamics / Software ordinal: 1 | ||||||||||||||||||||||||||||||||||||||||||||
NMR representative | Selection criteria: minimized average | ||||||||||||||||||||||||||||||||||||||||||||
NMR ensemble | Conformer selection criteria: structures with the lowest energy Conformers calculated total number: 500 / Conformers submitted total number: 21 |