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Yorodumi- PDB-2kr5: Solution Structure of an Acyl Carrier Protein Domain from Fungal ... -
+Open data
-Basic information
Entry | Database: PDB / ID: 2kr5 | ||||||
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Title | Solution Structure of an Acyl Carrier Protein Domain from Fungal Type I Polyketide Synthase | ||||||
Components | Aflatoxin biosynthesis polyketide synthase | ||||||
Keywords | TRANSPORT PROTEIN / acyl carrrier protein / holo / phosphopantetheine / aflatoxin biosynthesis | ||||||
Function / homology | Function and homology information noranthrone synthase / aflatoxin biosynthetic process / norsolorinate anthrone synthase activity / fatty acid synthase activity / phosphopantetheine binding / fatty acid biosynthetic process / identical protein binding Similarity search - Function | ||||||
Biological species | Aspergillus parasiticus (mold) | ||||||
Method | SOLUTION NMR / simulated annealing | ||||||
Authors | Wattana-amorn, P. / Williams, C. / Ploskon, E. / Cox, R.J. / Simpson, T.J. / Crosby, J. / Crump, M.P. | ||||||
Citation | Journal: Biochemistry / Year: 2010 Title: Solution structure of an acyl carrier protein domain from a fungal type I polyketide synthase. Authors: Wattana-amorn, P. / Williams, C. / Ploskon, E. / Cox, R.J. / Simpson, T.J. / Crosby, J. / Crump, M.P. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 2kr5.cif.gz | 577.5 KB | Display | PDBx/mmCIF format |
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PDB format | pdb2kr5.ent.gz | 491.2 KB | Display | PDB format |
PDBx/mmJSON format | 2kr5.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 2kr5_validation.pdf.gz | 403.3 KB | Display | wwPDB validaton report |
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Full document | 2kr5_full_validation.pdf.gz | 525 KB | Display | |
Data in XML | 2kr5_validation.xml.gz | 30.4 KB | Display | |
Data in CIF | 2kr5_validation.cif.gz | 49.3 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/kr/2kr5 ftp://data.pdbj.org/pub/pdb/validation_reports/kr/2kr5 | HTTPS FTP |
-Related structure data
Similar structure data |
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-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: Protein | Mass: 9429.590 Da / Num. of mol.: 1 / Fragment: UNP residues 1705-1791 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Aspergillus parasiticus (mold) / Gene: pksL1 / Production host: Escherichia coli (E. coli) / References: UniProt: Q12053 |
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#2: Chemical | ChemComp-PNS / |
-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR Details: Solution Structure of holo-ACP Domain from Norsolorinic acid Synthase in Aspergillus parasiticus | ||||||||||||||||||||||||||||||||||||||||||||||||
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NMR experiment |
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-Sample preparation
Details | Contents: 1 mM [U-95% 13C; U-95% 15N] ACP-1, 90% H2O/10% D2O Solvent system: 90% H2O/10% D2O |
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Sample | Conc.: 1 mM / Component: ACP-1 / Isotopic labeling: [U-95% 13C; U-95% 15N] |
Sample conditions | pH: 5.8 / Pressure: ambient / Temperature: 298 K |
-NMR measurement
NMR spectrometer | Type: Varian INOVA / Manufacturer: Varian / Model: INOVA / Field strength: 600 MHz |
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-Processing
NMR software |
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Refinement | Method: simulated annealing / Software ordinal: 1 | ||||||||||||||||||||
NMR representative | Selection criteria: lowest energy | ||||||||||||||||||||
NMR ensemble | Conformer selection criteria: structures with the lowest energy Conformers calculated total number: 100 / Conformers submitted total number: 20 |