+Open data
-Basic information
Entry | Database: PDB / ID: 2kc5 | ||||||
---|---|---|---|---|---|---|---|
Title | Solution Structure of HybE from Escherichia coli | ||||||
Components | Hydrogenase-2 operon protein hybE | ||||||
Keywords | CHAPERONE | ||||||
Function / homology | Function and homology information | ||||||
Biological species | Escherichia coli (E. coli) | ||||||
Method | SOLUTION NMR / molecular dynamics | ||||||
Model type details | minimized average | ||||||
Authors | Jin, C. / Shao, X. / Lu, J. / Li, Y. | ||||||
Citation | Journal: Proteins / Year: 2009 Title: Solution structure of the Escherichia coli HybE reveals a novel fold Authors: Shao, X. / Lu, J. / Hu, Y. / Xia, B. / Jin, C. | ||||||
History |
|
-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
---|
-Downloads & links
-Download
PDBx/mmCIF format | 2kc5.cif.gz | 960.7 KB | Display | PDBx/mmCIF format |
---|---|---|---|---|
PDB format | pdb2kc5.ent.gz | 838.4 KB | Display | PDB format |
PDBx/mmJSON format | 2kc5.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/kc/2kc5 ftp://data.pdbj.org/pub/pdb/validation_reports/kc/2kc5 | HTTPS FTP |
---|
-Related structure data
Similar structure data |
---|
-Links
-Assembly
Deposited unit |
| |||||||||
---|---|---|---|---|---|---|---|---|---|---|
1 |
| |||||||||
NMR ensembles |
|
-Components
#1: Protein | Mass: 17979.574 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Escherichia coli (E. coli) / Strain: K-12 / Gene: hybE / Production host: Escherichia coli BL21(DE3) (bacteria) / Strain (production host): BL21(DE3) / References: UniProt: P0AAN1 |
---|
-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
NMR experiment |
|
-Sample preparation
Details | Contents: 1mM [U-99% 15N] 50mM NaCl, 50mM PBS-1, 1mM [U-99% 13C; U-99% 15N] 50mM NaCl, 50mM PBS-2, 90% H2O/10% D2O Solvent system: 90% H2O/10% D2O | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample |
| ||||||||||||
Sample conditions | Ionic strength: 100 / pH: 7.0 / Pressure: ambient / Temperature: 298 K |
-NMR measurement
NMR spectrometer |
|
---|
-Processing
NMR software |
| ||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Refinement | Method: molecular dynamics / Software ordinal: 1 | ||||||||||||||||||||||||
NMR constraints | NOE constraints total: 4243 / NOE intraresidue total count: 625 / NOE long range total count: 2506 / NOE medium range total count: 539 / NOE sequential total count: 249 | ||||||||||||||||||||||||
NMR representative | Selection criteria: lowest energy | ||||||||||||||||||||||||
NMR ensemble | Conformer selection criteria: structures with the lowest energy Conformers calculated total number: 100 / Conformers submitted total number: 20 / Representative conformer: 1 |