Mass: 8530.462 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Geobacter metallireducens GS-15 (bacteria) Species: metallireducens / Gene: Gmet_1567 / Plasmid: pET 21-23C / Species (production host): coli / Production host: Escherichia coli (E. coli) / Strain (production host): BL21(DE3)+Magic / References: UniProt: Q39VC5
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Experimental details
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Experiment
Experiment
Method: SOLUTION NMR / Details: CASP target
NMR experiment
Conditions-ID
Experiment-ID
Solution-ID
Type
1
1
1
2D 1H-15N HSQC
1
2
1
2D 1H-13C HSQC
1
3
1
(4,3)D GFT-HNNCABCA
1
4
1
(4,3)D GFT-CABCA(CO)NHN
1
5
1
(4,3)D GFT-HABCAB(CO)NHN
1
6
1
3DCBCA(CO)NH
1
7
1
3DHBHA(CO)NH
1
8
1
3D HNCO
1
9
1
3D (H)CCH-TOCSY
1
10
1
3D-CCH-TOCSY
1
11
1
3D 1H-15N NOESY
1
12
1
3D 1H-13C aliph NOESY
1
13
1
3D 1H-13C arom NOESY
1
14
1
3D (H)CCH-COSY
2
15
2
2D 1H-15N HSQC
1
16
1
2D 1H-15N HSQC
1
17
1
2D 1H-13C HSQC
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Sample preparation
Details
Solution-ID
Contents
Solvent system
1
1.06 mM [U-100% 13C; U-100% 15N] GmR137, THiS protein, 90% H2O/10% D2O
90% H2O/10% D2O
2
1.26 mM [U-10% 13C; U-99% 15N] GmR137, THiS protein, 90% H2O/10% D2O
90% H2O/10% D2O
Sample
Conc. (mg/ml)
Component
Isotopic labeling
Solution-ID
1.06mM
GmR137, THiSprotein
[U-100% 13C; U-100% 15N]
1
1.26mM
GmR137, THiSprotein
[U-10% 13C; U-99% 15N]
2
Sample conditions
Conditions-ID
Ionic strength
pH
Pressure (kPa)
Temperature (K)
1
5mMCaCl2, 100mMNaCl
6.5
ambient
293K
2
5mMCaCl2, 100mMNaCl
6.5
ambient
293K
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NMR measurement
NMR spectrometer
Type
Manufacturer
Model
Field strength (MHz)
Spectrometer-ID
Bruker Avance
Bruker
AVANCE
800
1
Varian INOVA
Varian
INOVA
600
2
Varian INOVA
Varian
INOVA
500
3
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Processing
NMR software
Name
Version
Developer
Classification
CNS
2.0.6
Brunger, Adams, Clore, Gros, NilgesandRead
refinement
AutoStructure
2.2.1
Huang, Tejero, PowersandMontelione
structuresolution
CYANA
2.1
Guntert, MumenthalerandWuthrich
structuresolution
AutoAssign
2.4.0
Zimmerman, Moseley, KulikowskiandMontelione
chemicalshiftassignment
Refinement
Method: simulated annealing / Software ordinal: 1 Details: The structure was obtained using triple resonance NMR spectroscopy. GFT-NMR experiments were used for backbone resonance assignments and conventional 3D TOCSY and COSY experiments were used ...Details: The structure was obtained using triple resonance NMR spectroscopy. GFT-NMR experiments were used for backbone resonance assignments and conventional 3D TOCSY and COSY experiments were used to obtain sidechain resonance assignments. Automated NOESY assignments were made using AUTOSTRUCTURE and CYANA-2.1. Dihedral angle constraints were obtained from TALOS. The structure calculation was done excluding 5 HIS from 8-residue C-terminal tag (LEHHHHHH). Completeness of assignments excluding 5-HIS: Backbone - 100%, Sidechain (aliphatic) - 99% Sidechain (aromatic) - 96%. The assignments were validated using AVS software. Final structure quality factros (excluding 5 HIS) determined using PSVS-v1.3: Ordered residues are defiend as: 1-13, 18-29, 32-63. (a) RMSD (ordered residues) all backbone atoms: 0.7A and heavy atoms: 1.2A. (b) Ramachandran statistics for ordered residues: Most favored region: 82.8%, additionally allowed regions: 17.0% generously allowed region: 0.1%, disallowed regions: 0.1%. (c) Procheck scores for ordered residues (RAW/Z-): Phi/psi -0.58/-1.97, all -0.48/-2.84, (d) MolProbity clashscores (RAW/Z-) 17.03/-1.40, (e) RPF scores for the goodness of the fit to NOESY data: Recall - 0.99, Precision - 0.942, F-measure - 0.966 and final dp score - 0.88. (f) Number of close contacts for 20 models: 6, RMS deviation for bond angles - 0.6deg, RMS deviation for bond lengths - 0.009A.
NMR constraints
NOE constraints total: 969 / NOE intraresidue total count: 144 / NOE long range total count: 269 / NOE medium range total count: 207 / NOE sequential total count: 349 / Protein phi angle constraints total count: 41 / Protein psi angle constraints total count: 41
NMR representative
Selection criteria: lowest energy
NMR ensemble
Conformer selection criteria: structures with the lowest energy Conformers calculated total number: 140 / Conformers submitted total number: 20 / Maximum upper distance constraint violation: 0.2 Å / Torsion angle constraint violation method: PSVS software
NMR ensemble rms
Distance rms dev: 0.01 Å
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