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Yorodumi- PDB-2jsg: NMR solution structure of the anticodon of E.coli TRNA-VAL3 with ... -
+Open data
-Basic information
Entry | Database: PDB / ID: 2jsg | |||||||||||||||||||||||
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Title | NMR solution structure of the anticodon of E.coli TRNA-VAL3 with 1 modification (M6A37) | |||||||||||||||||||||||
Components | 5'-R(*Keywords | RNA / E.coli / Valine / TRNA / ANTICODON STEM LOOP / TRNA DOMAIN / RNA HAIRPIN / N6-methyladenosine / M6A | Function / homology | RNA / RNA (> 10) | Function and homology information Method | SOLUTION NMR / torsion angle dynamics | Model type details | minimized average | Authors | Vendeix, F.A.P. / Dziergowska, A. / Gustilo, E.M. / Graham, W.D. / Sproat, B. / Malkiewicz, A. / Agris, P.F. | Citation | Journal: To be Published | Title: Wobble-Position Modifications Pre-structure tRNA's Anticodon for Ribosome-Mediated Codon Binding Authors: Vendeix, F.A.P. / Dziergowska, A. / Gustilo, E.M. / Graham, W.D. / Sproat, B. / Malkiewicz, A. / Agris, P.F. History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 2jsg.cif.gz | 122.5 KB | Display | PDBx/mmCIF format |
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PDB format | pdb2jsg.ent.gz | 100.8 KB | Display | PDB format |
PDBx/mmJSON format | 2jsg.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/js/2jsg ftp://data.pdbj.org/pub/pdb/validation_reports/js/2jsg | HTTPS FTP |
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-Related structure data
-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: RNA chain | Mass: 5416.305 Da / Num. of mol.: 1 / Source method: obtained synthetically |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||||||||||||||
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NMR experiment |
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-Sample preparation
Details |
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Sample |
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Sample conditions |
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-NMR measurement
NMR spectrometer |
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-Processing
NMR software |
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Refinement | Method: torsion angle dynamics / Software ordinal: 1 / Details: anneal.inp protocol in CNS | ||||||||||||||||||||||||||||
NMR constraints | NOE constraints total: 601 / Hydrogen bond constraints total count: 28 | ||||||||||||||||||||||||||||
NMR representative | Selection criteria: minimized average structure | ||||||||||||||||||||||||||||
NMR ensemble | Conformer selection criteria: structures with the lowest energy Conformers calculated total number: 80 / Conformers submitted total number: 11 / Maximum lower distance constraint violation: 0.1 Å / Maximum torsion angle constraint violation: 5 ° / Maximum upper distance constraint violation: 0.5 Å |