登録情報 | データベース: PDB / ID: 2jmd |
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タイトル | Solution Structure of the Ring Domain of Human TRAF6 |
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要素 | TNF receptor-associated factor 6 |
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キーワード | LIGASE / Protein / Zinc-binding / human TNF receptor-associated factor 6 / Zn2+ coordination |
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機能・相同性 | 機能・相同性情報
interleukin-17A-mediated signaling pathway / protein kinase B binding / CD40 signaling pathway / MyD88 dependent cascade initiated on endosome / TRAF6 mediated induction of NFkB and MAP kinases upon TLR7/8 or 9 activation / MyD88 cascade initiated on plasma membrane / interleukin-17-mediated signaling pathway / activation of protein kinase activity / protein branched polyubiquitination / interleukin-33-mediated signaling pathway ...interleukin-17A-mediated signaling pathway / protein kinase B binding / CD40 signaling pathway / MyD88 dependent cascade initiated on endosome / TRAF6 mediated induction of NFkB and MAP kinases upon TLR7/8 or 9 activation / MyD88 cascade initiated on plasma membrane / interleukin-17-mediated signaling pathway / activation of protein kinase activity / protein branched polyubiquitination / interleukin-33-mediated signaling pathway / CD40 receptor complex / toll-like receptor 3 signaling pathway / TRIF-dependent toll-like receptor signaling pathway / Regulated proteolysis of p75NTR / myeloid dendritic cell differentiation / positive regulation of osteoclast differentiation / positive regulation of lipopolysaccharide-mediated signaling pathway / tumor necrosis factor receptor binding / regulation of immunoglobulin production / ubiquitin conjugating enzyme binding / non-canonical NF-kappaB signal transduction / regulation of canonical NF-kappaB signal transduction / positive regulation of leukocyte adhesion to vascular endothelial cell / interleukin-1-mediated signaling pathway / extrinsic component of cytoplasmic side of plasma membrane / MyD88-dependent toll-like receptor signaling pathway / TRAF6 mediated IRF7 activation / MyD88:MAL(TIRAP) cascade initiated on plasma membrane / T-helper 1 type immune response / toll-like receptor 4 signaling pathway / ubiquitin-ubiquitin ligase activity / cytoplasmic pattern recognition receptor signaling pathway / regulation of neurotransmitter receptor localization to postsynaptic specialization membrane / cellular response to cytokine stimulus / stimulatory C-type lectin receptor signaling pathway / Fc-epsilon receptor signaling pathway / odontogenesis of dentin-containing tooth / positive regulation of JUN kinase activity / TRAF6 mediated NF-kB activation / autophagosome assembly / protein K63-linked ubiquitination / canonical NF-kappaB signal transduction / positive regulation of type I interferon production / IRAK2 mediated activation of TAK1 complex / Alpha-protein kinase 1 signaling pathway / bone resorption / IRAK1 recruits IKK complex / IRAK1 recruits IKK complex upon TLR7/8 or 9 stimulation / IRAK2 mediated activation of TAK1 complex upon TLR7/8 or 9 stimulation / TICAM1,TRAF6-dependent induction of TAK1 complex / p75NTR recruits signalling complexes / TRAF6-mediated induction of TAK1 complex within TLR4 complex / TRAF6 mediated IRF7 activation in TLR7/8 or 9 signaling / NF-kB is activated and signals survival / NRIF signals cell death from the nucleus / protein autoubiquitination / TICAM1, RIP1-mediated IKK complex recruitment / JNK (c-Jun kinases) phosphorylation and activation mediated by activated human TAK1 / positive regulation of protein ubiquitination / lipid droplet / signaling adaptor activity / positive regulation of T cell proliferation / IKK complex recruitment mediated by RIP1 / positive regulation of interleukin-12 production / antiviral innate immune response / positive regulation of interleukin-2 production / activated TAK1 mediates p38 MAPK activation / Regulation of NF-kappa B signaling / response to interleukin-1 / ossification / osteoclast differentiation / lipopolysaccharide-mediated signaling pathway / tumor necrosis factor-mediated signaling pathway / NOD1/2 Signaling Pathway / TAK1-dependent IKK and NF-kappa-B activation / neural tube closure / positive regulation of JNK cascade / CLEC7A (Dectin-1) signaling / positive regulation of NF-kappaB transcription factor activity / FCERI mediated NF-kB activation / positive regulation of T cell cytokine production / RING-type E3 ubiquitin transferase / antigen processing and presentation of exogenous peptide antigen via MHC class II / Interleukin-1 signaling / positive regulation of interleukin-6 production / SARS-CoV-1 activates/modulates innate immune responses / cytoplasmic side of plasma membrane / histone deacetylase binding / Ovarian tumor domain proteases / protein polyubiquitination / ubiquitin-protein transferase activity / Downstream TCR signaling / ubiquitin protein ligase activity / PIP3 activates AKT signaling / T cell receptor signaling pathway / cellular response to lipopolysaccharide / PI5P, PP2A and IER3 Regulate PI3K/AKT Signaling / cell cortex / protein-macromolecule adaptor activity / regulation of apoptotic process類似検索 - 分子機能 TNF receptor-associated factor 6, zinc finger 2 / TNF receptor-associated factor 6 zinc finger 2 / TNF receptor-associated factor 6 / TNF receptor-associated factor 6, MATH domain / TRAF-type zinc finger / TNF receptor-associated factor TRAF, metazoa / : / TRAF/meprin, MATH domain / Zinc finger, TRAF-type / Zinc finger TRAF-type profile. ...TNF receptor-associated factor 6, zinc finger 2 / TNF receptor-associated factor 6 zinc finger 2 / TNF receptor-associated factor 6 / TNF receptor-associated factor 6, MATH domain / TRAF-type zinc finger / TNF receptor-associated factor TRAF, metazoa / : / TRAF/meprin, MATH domain / Zinc finger, TRAF-type / Zinc finger TRAF-type profile. / Zinc finger, C3HC4 type (RING finger) / MATH/TRAF domain / MATH/TRAF domain profile. / meprin and TRAF homology / TRAF-like / Zinc/RING finger domain, C3HC4 (zinc finger) / Herpes Virus-1 / Zinc finger, RING-type, conserved site / Zinc finger RING-type signature. / Ring finger / Zinc finger RING-type profile. / Zinc finger, RING-type / Zinc finger, RING/FYVE/PHD-type / 2-Layer Sandwich / Alpha Beta類似検索 - ドメイン・相同性 |
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生物種 | Homo sapiens (ヒト) |
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手法 | 溶液NMR / torsion angle dynamics, simulated annealing |
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データ登録者 | Mercier, P. / Lewis, M.J. / Hau, D.D. / Saltibus, L.F. / Xiao, W. / Spyracopoulos, L. |
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引用 | ジャーナル: Protein Sci. / 年: 2007 タイトル: Structure, interactions, and dynamics of the RING domain from human TRAF6 著者: Mercier, P. / Lewis, M.J. / Hau, D.D. / Saltibus, L.F. / Xiao, W. / Spyracopoulos, L. |
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履歴 | 登録 | 2006年11月2日 | 登録サイト: RCSB / 処理サイト: RCSB |
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改定 1.0 | 2007年4月10日 | Provider: repository / タイプ: Initial release |
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改定 1.1 | 2008年5月1日 | Group: Version format compliance |
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改定 1.2 | 2011年7月13日 | Group: Version format compliance |
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改定 1.3 | 2022年3月9日 | Group: Data collection / Database references / Derived calculations カテゴリ: database_2 / pdbx_nmr_software ...database_2 / pdbx_nmr_software / pdbx_struct_assembly / pdbx_struct_conn_angle / pdbx_struct_oper_list / struct_conn / struct_ref_seq_dif / struct_site Item: _database_2.pdbx_DOI / _database_2.pdbx_database_accession ..._database_2.pdbx_DOI / _database_2.pdbx_database_accession / _pdbx_nmr_software.name / _pdbx_struct_conn_angle.ptnr1_auth_comp_id / _pdbx_struct_conn_angle.ptnr1_auth_seq_id / _pdbx_struct_conn_angle.ptnr1_label_atom_id / _pdbx_struct_conn_angle.ptnr1_label_comp_id / _pdbx_struct_conn_angle.ptnr1_label_seq_id / _pdbx_struct_conn_angle.ptnr3_auth_comp_id / _pdbx_struct_conn_angle.ptnr3_auth_seq_id / _pdbx_struct_conn_angle.ptnr3_label_atom_id / _pdbx_struct_conn_angle.ptnr3_label_comp_id / _pdbx_struct_conn_angle.ptnr3_label_seq_id / _pdbx_struct_conn_angle.value / _struct_conn.pdbx_dist_value / _struct_conn.ptnr1_auth_comp_id / _struct_conn.ptnr1_auth_seq_id / _struct_conn.ptnr1_label_asym_id / _struct_conn.ptnr1_label_atom_id / _struct_conn.ptnr1_label_comp_id / _struct_conn.ptnr1_label_seq_id / _struct_conn.ptnr2_auth_comp_id / _struct_conn.ptnr2_auth_seq_id / _struct_conn.ptnr2_label_asym_id / _struct_conn.ptnr2_label_atom_id / _struct_conn.ptnr2_label_comp_id / _struct_conn.ptnr2_label_seq_id / _struct_ref_seq_dif.details / _struct_site.pdbx_auth_asym_id / _struct_site.pdbx_auth_comp_id / _struct_site.pdbx_auth_seq_id |
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改定 1.4 | 2023年12月20日 | Group: Data collection / Other カテゴリ: chem_comp_atom / chem_comp_bond / pdbx_database_status Item: _pdbx_database_status.deposit_site |
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