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Yorodumi- PDB-2j89: Functional and structural aspects of poplar cytosolic and plastid... -
+Open data
-Basic information
Entry | Database: PDB / ID: 2j89 | ||||||
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Title | Functional and structural aspects of poplar cytosolic and plastidial type A methionine sulfoxide reductases | ||||||
Components | METHIONINE SULFOXIDE REDUCTASE A | ||||||
Keywords | OXIDOREDUCTASE / MSRA / POPLAR / SULFOXIDE REDUCTASE | ||||||
Function / homology | Function and homology information L-methionine-(S)-S-oxide reductase activity / peptide-methionine (S)-S-oxide reductase / peptide-methionine (S)-S-oxide reductase activity / cellular response to oxidative stress / cytoplasm Similarity search - Function | ||||||
Biological species | POPULUS TRICHOCARPA (black cottonwood) | ||||||
Method | X-RAY DIFFRACTION / SYNCHROTRON / OTHER / Resolution: 1.7 Å | ||||||
Authors | Rouhier, N. / Kauffmann, B. / Tete-Favier, F. / Palladino, P. / Gans, P. / Branlant, G. / Jacquot, J.P. / Boschi-Muller, S. | ||||||
Citation | Journal: J.Biol.Chem. / Year: 2007 Title: Functional and Structural Aspects of Poplar Cytosolic and Plastidial Type a Methionine Sulfoxide Reductases Authors: Rouhier, N. / Kauffmann, B. / Tete-Favier, F. / Palladino, P. / Gans, P. / Branlant, G. / Jacquot, J.P. / Boschi-Muller, S. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 2j89.cif.gz | 50.5 KB | Display | PDBx/mmCIF format |
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PDB format | pdb2j89.ent.gz | 38.5 KB | Display | PDB format |
PDBx/mmJSON format | 2j89.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 2j89_validation.pdf.gz | 252.8 KB | Display | wwPDB validaton report |
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Full document | 2j89_full_validation.pdf.gz | 255.9 KB | Display | |
Data in XML | 2j89_validation.xml.gz | 5.9 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/j8/2j89 ftp://data.pdbj.org/pub/pdb/validation_reports/j8/2j89 | HTTPS FTP |
-Related structure data
Similar structure data |
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-Links
-Assembly
Deposited unit |
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1 |
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Unit cell |
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-Components
#1: Protein | Mass: 29318.014 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) POPULUS TRICHOCARPA (black cottonwood) / Production host: ESCHERICHIA COLI (E. coli) / References: UniProt: Q6QPJ4, UniProt: A9PFX3*PLUS | ||
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#2: Chemical | #3: Water | ChemComp-HOH / | |
-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION |
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-Sample preparation
Crystal | Density Matthews: 2.42 Å3/Da / Density % sol: 49.2 % |
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-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: SYNCHROTRON / Site: ESRF / Beamline: BM30A / Wavelength: 1.009 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1.009 Å / Relative weight: 1 |
Reflection | Resolution: 1.7→25 Å / Num. obs: 23121 / % possible obs: 98.2 % / Observed criterion σ(I): 3 / Redundancy: 10 % / Rmerge(I) obs: 0.05 / Net I/σ(I): 8.6 |
-Processing
Software | Name: CNS / Version: 1.1 / Classification: refinement | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Refinement | Method to determine structure: OTHER / Resolution: 1.7→25 Å / Cross valid method: THROUGHOUT / σ(F): 0 / Stereochemistry target values: MAXIMUM LIKELIHOOD
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Refinement step | Cycle: LAST / Resolution: 1.7→25 Å
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Refine LS restraints |
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