- PDB-2imr: Crystal structure of amidohydrolase DR_0824 from Deinococcus radi... -
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Open data
ID or keywords:
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Basic information
Entry
Database: PDB / ID: 2imr
Title
Crystal structure of amidohydrolase DR_0824 from Deinococcus radiodurans
Components
Hypothetical protein DR_0824
Keywords
STRUCTURAL GENOMICS / UNKNOWN FUNCTION / zinc / nysgxrc / psi2 / 9256a / Protein Structure Initiative / New York SGX Research Center for Structural Genomics
Function / homology
Function and homology information
aminodeoxyfutalosine deaminase / hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds / menaquinone biosynthetic process / metal ion binding Similarity search - Function
Method to determine structure: SAD / Resolution: 1.78→29.3 Å / Cross valid method: THROUGHOUT / σ(F): 0 / Stereochemistry target values: Engh & Huber Details: THE MISSING RESIDUES LISTED IN REMARK 465 AND MISSING ATOMS IN REMARK 470, ARE DUE TO LACK OF ELECTRON DENSITY
Rfactor
Num. reflection
% reflection
Selection details
Rfree
0.23
1321
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RANDOM
Rwork
0.201
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all
0.211
33833
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obs
0.211
32793
91.9 %
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Displacement parameters
Baniso -1
Baniso -2
Baniso -3
1-
-1.582 Å2
0 Å2
0.184 Å2
2-
-
-2.353 Å2
0 Å2
3-
-
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3.935 Å2
Refinement step
Cycle: LAST / Resolution: 1.78→29.3 Å
Protein
Nucleic acid
Ligand
Solvent
Total
Num. atoms
2913
0
1
170
3084
Refine LS restraints
Refine-ID
Type
Dev ideal
X-RAY DIFFRACTION
c_angle_deg
1.31
X-RAY DIFFRACTION
c_bond_d
0.0049
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