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Yorodumi- PDB-2hs7: Multipattern rietveld refinement with protein powder data: An app... -
+Open data
-Basic information
Entry | Database: PDB / ID: 2hs7 | ||||||
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Title | Multipattern rietveld refinement with protein powder data: An approach to higher resolution | ||||||
Components | Lysozyme C | ||||||
Keywords | HYDROLASE / Powder diffraction / Rietveld refinement / Lysozyme | ||||||
Function / homology | Function and homology information Antimicrobial peptides / Neutrophil degranulation / beta-N-acetylglucosaminidase activity / cell wall macromolecule catabolic process / lysozyme / lysozyme activity / killing of cells of another organism / defense response to Gram-negative bacterium / defense response to Gram-positive bacterium / defense response to bacterium ...Antimicrobial peptides / Neutrophil degranulation / beta-N-acetylglucosaminidase activity / cell wall macromolecule catabolic process / lysozyme / lysozyme activity / killing of cells of another organism / defense response to Gram-negative bacterium / defense response to Gram-positive bacterium / defense response to bacterium / endoplasmic reticulum / extracellular space / identical protein binding / cytoplasm Similarity search - Function | ||||||
Biological species | Gallus gallus (chicken) | ||||||
Method | POWDER DIFFRACTION / SYNCHROTRON / Resolution: 1.98 Å | ||||||
Authors | Von Dreele, R.B. | ||||||
Citation | Journal: J.APPL.CRYSTALLOGR. / Year: 2007 Title: Multipattern Rietveld refinement with protein powder data: an approach to higher resolution Authors: Von Dreele, R.B. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 2hs7.cif.gz | 29.8 KB | Display | PDBx/mmCIF format |
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PDB format | pdb2hs7.ent.gz | 21.5 KB | Display | PDB format |
PDBx/mmJSON format | 2hs7.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/hs/2hs7 ftp://data.pdbj.org/pub/pdb/validation_reports/hs/2hs7 | HTTPS FTP |
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-Related structure data
Related structure data | |
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Similar structure data |
-Links
-Assembly
Deposited unit |
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1 |
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-Components
#1: Protein | Mass: 14331.160 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Gallus gallus (chicken) / Cellular location: CYTOPLASM / Gene: LYZ / Production host: Escherichia coli (E. coli) / References: UniProt: P00698, lysozyme |
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#2: Water | ChemComp-HOH / |
-Experimental details
-Experiment
Experiment | Method: POWDER DIFFRACTION |
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-Sample preparation
Crystal grow | Temperature: 296 K / Method: batch crystallization / pH: 4 Details: Rapid precipitation for 5 samples from 1.25, 1.00, 0.75, 0.50 and 0.25M NACL, in KHPHTHALATE BUFFER, pH 4.0, BATCH CRYSTALLIZATION, temperature 296K |
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-Data collection
Diffraction | Mean temperature: 298 K |
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Diffraction source | Source: SYNCHROTRON / Site: APS / Beamline: 1-BM-C / Wavelength: 0.62074 Å |
Detector | Type: MAR scanner 345 mm plate / Detector: IMAGE PLATE / Date: Jun 14, 2004 |
Radiation | Monochromator: SI(111) / Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.62074 Å / Relative weight: 1 |
Reflection | Resolution: 1.98→17.77 Å / Num. all: 8766 / Num. obs: 8762 / % possible obs: 99.7 % / Redundancy: 4.988 % / Biso Wilson estimate: 31.7 Å2 / Rmerge(I) obs: 0.026 |
-Processing
Software |
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