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Open data
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Basic information
Entry | Database: PDB / ID: 2grm | ||||||
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Title | Crystal structure of PrgX/iCF10 complex | ||||||
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![]() | TRANSCRIPTION / receptor / inhibitor | ||||||
Function / homology | Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat - #400 / lambda repressor-like DNA-binding domains / 434 Repressor (Amino-terminal Domain) / Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat / Alpha Horseshoe / Orthogonal Bundle / Mainly Alpha / : ![]() | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() ![]() | ||||||
![]() | Shi, K. / Kozlowicz, B.K. / Gu, Z.Y. / Ohlendorf, D.H. / Earhart, C.A. / Dunny, G.M. | ||||||
![]() | ![]() Title: Molecular basis for control of conjugation by bacterial pheromone and inhibitor peptides. Authors: Kozlowicz, B.K. / Shi, K. / Gu, Z.Y. / Ohlendorf, D.H. / Earhart, C.A. / Dunny, G.M. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 192 KB | Display | ![]() |
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PDB format | ![]() | 156.6 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 458 KB | Display | ![]() |
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Full document | ![]() | 493.6 KB | Display | |
Data in XML | ![]() | 36.8 KB | Display | |
Data in CIF | ![]() | 49.9 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
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Links
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Assembly
Deposited unit | ![]()
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1 | ![]()
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2 | ![]()
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Unit cell |
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Components on special symmetry positions |
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Details | The second part of the biological assembly is generated by the two fold axis: -x, -y, z+1/2. |
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Components
#1: Protein | Mass: 37077.516 Da / Num. of mol.: 3 / Mutation: Y231C Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() ![]() #2: Protein/peptide | Mass: 790.002 Da / Num. of mol.: 2 / Source method: obtained synthetically #3: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.68 Å3/Da / Density % sol: 54.16 % |
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Crystal grow | Temperature: 298 K / Method: evaporation / pH: 5.6 / Details: LiCl, pH 5.6, EVAPORATION, temperature 298K |
-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: ![]() |
Detector | Type: RIGAKU RAXIS IV / Detector: IMAGE PLATE / Date: Jan 1, 2005 |
Radiation | Monochromator: graphite / Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1.5418 Å / Relative weight: 1 |
Reflection | Resolution: 3→40 Å / Num. all: 24750 / Num. obs: 24503 / % possible obs: 98.2 % / Observed criterion σ(I): 5.1 |
Reflection shell | Resolution: 3→3.18 Å / % possible all: 95.3 |
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Processing
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Refinement | Method to determine structure: ![]()
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Solvent computation | Solvent model: FLAT MODEL / Bsol: 53.5006 Å2 / ksol: 0.315236 e/Å3 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso mean: 100.5 Å2
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Refine analyze |
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Refinement step | Cycle: LAST / Resolution: 3→39.62 Å
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Refine LS restraints |
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LS refinement shell | Resolution: 3→3.19 Å / Rfactor Rfree error: 0.034 / Total num. of bins used: 6
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Xplor file |
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