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Yorodumi- PDB-2g1d: Solution Structure of Ribosomal Protein S24E from Thermoplasma ac... -
+Open data
-Basic information
Entry | Database: PDB / ID: 2g1d | ||||||
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Title | Solution Structure of Ribosomal Protein S24E from Thermoplasma acidophilum | ||||||
Components | 30S ribosomal protein S24e | ||||||
Keywords | RIBOSOME / Ribosomal protein | ||||||
Function / homology | Function and homology information ribosome / structural constituent of ribosome / ribonucleoprotein complex / translation Similarity search - Function | ||||||
Biological species | Thermoplasma acidophilum (acidophilic) | ||||||
Method | SOLUTION NMR / distance geometry, simulated annealing, torsion angle dynamics | ||||||
Model type details | minimized average | ||||||
Authors | Jeon, B.-Y. / Hong, E.-M. / Jung, J.-W. / Yee, A. / Arrowsmith, C.H. / Lee, W. | ||||||
Citation | Journal: Proteins / Year: 2006 Title: Solution structure of TA1092, a ribosomal protein S24e from Thermoplasma acidophilum Authors: Jeon, B.-Y. / Jung, J.-W. / Kim, D.-W. / Yee, A. / Arrowsmith, C.H. / Lee, W. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 2g1d.cif.gz | 325.4 KB | Display | PDBx/mmCIF format |
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PDB format | pdb2g1d.ent.gz | 269 KB | Display | PDB format |
PDBx/mmJSON format | 2g1d.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 2g1d_validation.pdf.gz | 347.4 KB | Display | wwPDB validaton report |
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Full document | 2g1d_full_validation.pdf.gz | 475.7 KB | Display | |
Data in XML | 2g1d_validation.xml.gz | 46.3 KB | Display | |
Data in CIF | 2g1d_validation.cif.gz | 61.5 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/g1/2g1d ftp://data.pdbj.org/pub/pdb/validation_reports/g1/2g1d | HTTPS FTP |
-Related structure data
Similar structure data |
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-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: Protein | Mass: 11539.358 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Thermoplasma acidophilum (acidophilic) / Gene: TA1092 / Plasmid: pET15b / Species (production host): Escherichia coli / Production host: Escherichia coli BL21(DE3) (bacteria) / Strain (production host): BL21 (DE3) / References: UniProt: Q9HJ79 |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||
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NMR experiment |
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-Sample preparation
Details | Contents: 1.5mM Ribosomal 24E U-15N,13C; 50mM photasuim phosphate buffer NA; 90% H2O, 10% D2O Solvent system: 90% H2O/10% D2O |
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Sample conditions | pH: 6.5 / Pressure: ambient / Temperature: 298 K |
-NMR measurement
NMR spectrometer |
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-Processing
NMR software |
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Refinement | Method: distance geometry, simulated annealing, torsion angle dynamics Software ordinal: 1 | ||||||||||||||||
NMR representative | Selection criteria: minimized average structure | ||||||||||||||||
NMR ensemble | Conformer selection criteria: structures with the lowest energy Conformers calculated total number: 100 / Conformers submitted total number: 10 |