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Open data
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Basic information
Entry | Database: PDB / ID: 2es5 | ||||||||||||||||||
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Title | Structure of the SRE RNA | ||||||||||||||||||
![]() | 5'-R(*![]() RNA / RNA structure / stem-loop / pentaloop | Function / homology | RNA / RNA (> 10) | ![]() Method | SOLUTION NMR / simulated annealing | ![]() Allain, F.H.T. | ![]() ![]() Title: Shape-specific recognition in the structure of the Vts1p SAM domain with RNA. Authors: Oberstrass, F.C. / Lee, A. / Stefl, R. / Janis, M. / Chanfreau, G. / Allain, F.H. History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 287.6 KB | Display | ![]() |
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PDB format | ![]() | 237.2 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 324.1 KB | Display | ![]() |
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Full document | ![]() | 454.3 KB | Display | |
Data in XML | ![]() | 15.6 KB | Display | |
Data in CIF | ![]() | 25.2 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
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Links
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Assembly
Deposited unit | ![]()
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1 |
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NMR ensembles |
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Components
#1: RNA chain | Mass: 7372.392 Da / Num. of mol.: 1 / Source method: obtained synthetically / Details: RNA was prepared by in vitro transcription |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR |
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Sample preparation
Details | Contents: 1mM RNA |
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Sample conditions | Ionic strength: 50mM NaCl, 50mM Phosphate-Buffer / pH: 6.5 / Temperature: 303 K |
-NMR measurement
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M | ||||||||||||||||||||
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Radiation wavelength | Relative weight: 1 | ||||||||||||||||||||
NMR spectrometer |
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Processing
NMR software |
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Refinement | Method: simulated annealing / Software ordinal: 1 | ||||||||||||||||||||
NMR representative | Selection criteria: lowest energy | ||||||||||||||||||||
NMR ensemble | Conformer selection criteria: structures with the lowest energy Conformers calculated total number: 30 / Conformers submitted total number: 20 |