- PDB-2eqm: Solution structure of the TUDOR domain of PHD finger protein 20-l... -
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基本情報
登録情報
データベース: PDB / ID: 2eqm
タイトル
Solution structure of the TUDOR domain of PHD finger protein 20-like 1 [Homo sapiens]
要素
PHD finger protein 20-like 1
キーワード
TRANSCRIPTION / TUDOR domain / PHD finger protein 20-like 1 / Homo sapiens / Structural Genomics / NPPSFA / National Project on Protein Structural and Functional Analyses / RIKEN Structural Genomics/Proteomics Initiative / RSGI
機能・相同性
機能・相同性情報
methylation-dependent protein binding / NSL complex / Formation of WDR5-containing histone-modifying complexes / negative regulation of proteasomal ubiquitin-dependent protein catabolic process / negative regulation of protein catabolic process / regulation of transcription by RNA polymerase II / nucleoplasm / metal ion binding 類似検索 - 分子機能
: / PHD finger protein 20-like protein 1 / PHD finger protein 20-like / Agenet domain, plant type / Tudor-like domain present in plant sequences. / PhD finger domain / mbt repeat / Lysine-specific demethylase 4, Tudor domain / Jumonji domain-containing protein 2A Tudor domain / Tudor domain ...: / PHD finger protein 20-like protein 1 / PHD finger protein 20-like / Agenet domain, plant type / Tudor-like domain present in plant sequences. / PhD finger domain / mbt repeat / Lysine-specific demethylase 4, Tudor domain / Jumonji domain-containing protein 2A Tudor domain / Tudor domain / Tudor domain / SH3 type barrels. - #140 / Zinc finger, PHD-type, conserved site / Zinc finger PHD-type signature. / Zinc finger, FYVE/PHD-type / SH3 type barrels. / Zinc finger, RING/FYVE/PHD-type / Roll / Mainly Beta 類似検索 - ドメイン・相同性
PHD finger protein 20-like protein 1 / PHD finger protein 20-like protein 1 類似検索 - 構成要素
タイプ: Bruker AVANCE / 製造業者: Bruker / モデル: AVANCE / 磁場強度: 800 MHz
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解析
NMR software
名称
バージョン
開発者
分類
XwinNMR
3.5
Bruker
collection
NMRPipe
20030801
Delaglio, F.
解析
NMRView
5.0.4
Johnson, B.A.
データ解析
KUJIRA
0.982
Kobayashi, N.
データ解析
CYANA
2.0.17
Guntert, P.
構造決定
CYANA
2.0.17
Guntert, P.
精密化
精密化
手法: torsion angle dynamics / ソフトェア番号: 1
代表構造
選択基準: lowest energy
NMRアンサンブル
コンフォーマー選択の基準: structures with the least restraint violations, structures with the lowest energy, target function 計算したコンフォーマーの数: 100 / 登録したコンフォーマーの数: 20