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- PDB-2dxp: Crystal structure of the complex of the archaeal sulfolobus PTP-f... -
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Open data
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Basic information
Entry | Database: PDB / ID: 2dxp | ||||||
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Title | Crystal structure of the complex of the archaeal sulfolobus PTP-fold phosphatase with phosphopeptides A-(p)Y-R | ||||||
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![]() | HYDROLASE / PTP domain | ||||||
Function / homology | ![]() | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() ![]() | ||||||
![]() | Chu, H.M. / Wang, A.H.J. | ||||||
![]() | ![]() Title: Enzyme-substrate interactions revealed by the crystal structures of the archaeal Sulfolobus PTP-fold phosphatase and its phosphopeptide complexes Authors: Chu, H.M. / Wang, A.H.J. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 47.5 KB | Display | ![]() |
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PDB format | ![]() | 32.6 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 432.4 KB | Display | ![]() |
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Full document | ![]() | 434.4 KB | Display | |
Data in XML | ![]() | 9.6 KB | Display | |
Data in CIF | ![]() | 12.4 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 2i6iC ![]() 2i6jC ![]() 2i6mC ![]() 2i6oC ![]() 2i6pC ![]() 1oheS C: citing same article ( S: Starting model for refinement |
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Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components on special symmetry positions |
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Components
#1: Protein | Mass: 18417.100 Da / Num. of mol.: 1 / Mutation: C96S Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() ![]() |
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#2: Protein/peptide | Mass: 489.440 Da / Num. of mol.: 1 / Source method: obtained synthetically / Details: synthetic peptide |
#3: Water | ChemComp-HOH / |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.29 Å3/Da / Density % sol: 46.27 % |
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Crystal grow | Temperature: 298 K / Method: vapor diffusion, hanging drop / pH: 6.5 Details: pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K |
-Data collection
Diffraction | Mean temperature: 298 K |
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Diffraction source | Source: ![]() |
Detector | Type: RIGAKU RAXIS IV / Detector: IMAGE PLATE / Date: Jul 20, 2005 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1.54 Å / Relative weight: 1 |
Reflection | Resolution: 1.99→100 Å / Num. all: 10656 / Num. obs: 9678 / % possible obs: 90.8 % / Observed criterion σ(F): 0 / Redundancy: 4.1 % / Rmerge(I) obs: 0.083 / Rsym value: 0.055 / Net I/σ(I): 15.3 |
Reflection shell | Resolution: 1.99→2.06 Å / Redundancy: 3.7 % / Rmerge(I) obs: 0.676 / Mean I/σ(I) obs: 1.67 / Rsym value: 0.578 |
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Processing
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Refinement | Method to determine structure: ![]() Starting model: 1OHE Resolution: 2.1→50 Å / σ(F): 0
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Refinement step | Cycle: LAST / Resolution: 2.1→50 Å
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Refine LS restraints |
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