- PDB-2dmp: Solution structure of the third homeobox domain of Zinc fingers a... -
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基本情報
登録情報
データベース: PDB / ID: 2dmp
タイトル
Solution structure of the third homeobox domain of Zinc fingers and homeoboxes protein 2
要素
Zinc fingers and homeoboxes protein 2
キーワード
DNA BINDING PROTEIN / homeobox domain / three helices with the DNA binding helix-turn-helix motif / Structural Genomics / NPPSFA / National Project on Protein Structural and Functional Analyses / RIKEN Structural Genomics/Proteomics Initiative / RSGI
機能・相同性
機能・相同性情報
retinal bipolar neuron differentiation / mRNA catabolic process / somatic stem cell population maintenance / negative regulation of neuron differentiation / DNA-binding transcription factor activity, RNA polymerase II-specific / protein heterodimerization activity / negative regulation of DNA-templated transcription / chromatin / regulation of transcription by RNA polymerase II / negative regulation of transcription by RNA polymerase II ...retinal bipolar neuron differentiation / mRNA catabolic process / somatic stem cell population maintenance / negative regulation of neuron differentiation / DNA-binding transcription factor activity, RNA polymerase II-specific / protein heterodimerization activity / negative regulation of DNA-templated transcription / chromatin / regulation of transcription by RNA polymerase II / negative regulation of transcription by RNA polymerase II / protein homodimerization activity / DNA binding / nucleoplasm / identical protein binding / nucleus / metal ion binding / cytosol 類似検索 - 分子機能
タイプ: Bruker AVANCE / 製造業者: Bruker / モデル: AVANCE / 磁場強度: 800 MHz
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解析
NMR software
名称
バージョン
開発者
分類
XwinNMR
3.5
Bruker
collection
NMRPipe
20030801
Delaglio, F.
解析
NMRView
5.0.4
Johnson, B.A.
データ解析
KUJIRA
0.965
Kobayashi, N.
データ解析
CYANA
2.0.17
Guntert, P.
構造決定
CYANA
2.0.17
Guntert, P.
精密化
精密化
手法: torsion angle dynamics / ソフトェア番号: 1
代表構造
選択基準: lowest energy
NMRアンサンブル
コンフォーマー選択の基準: target function, structures with the lowest energy, structures with the least restraint violations 計算したコンフォーマーの数: 100 / 登録したコンフォーマーの数: 20