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- PDB-2cuy: Crystal structure of malonyl CoA-acyl carrier protein transacylas... -
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Open data
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Basic information
Entry | Database: PDB / ID: 2cuy | ||||||
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Title | Crystal structure of malonyl CoA-acyl carrier protein transacylase from Thermus thermophilus HB8 | ||||||
![]() | Malonyl CoA-[acyl carrier protein] transacylase | ||||||
![]() | TRANSFERASE / Structural Genomics / NPPSFA / National Project on Protein Structural and Functional Analyses / RIKEN Structural Genomics/Proteomics Initiative / RSGI | ||||||
Function / homology | ![]() [acyl-carrier-protein] S-malonyltransferase / [acyl-carrier-protein] S-malonyltransferase activity Similarity search - Function | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Misaki, S. / Suzuki, K. / Kunishima, N. / Sugawara, M. / Kuroishi, C. / RIKEN Structural Genomics/Proteomics Initiative (RSGI) | ||||||
![]() | ![]() Title: Crystal structure of malonyl CoA-acyl carrier protein transacylase from Thermus thermophilus HB8 Authors: Misaki, S. / Suzuki, K. / Kunishima, N. / Sugawara, M. / Kuroishi, C. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 140.5 KB | Display | ![]() |
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PDB format | ![]() | 109.8 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 436.3 KB | Display | ![]() |
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Full document | ![]() | 450.4 KB | Display | |
Data in XML | ![]() | 31.9 KB | Display | |
Data in CIF | ![]() | 48.3 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 1mlaS S: Starting model for refinement |
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Similar structure data | |
Other databases |
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 33428.504 Da / Num. of mol.: 2 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() ![]() References: UniProt: Q5SL77, [acyl-carrier-protein] S-malonyltransferase #2: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 3.68 Å3/Da / Density % sol: 66.62 % |
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Crystal grow | Temperature: 291 K / Method: evaporation / pH: 7.4 Details: magnesium sulfate, HEPES, pH 7.4, EVAPORATION, temperature 291K |
-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: RIGAKU / Detector: IMAGE PLATE / Details: mirror |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1 Å / Relative weight: 1 |
Reflection | Resolution: 2→50 Å / Num. obs: 63134 / % possible obs: 100 % / Observed criterion σ(I): 1 / Redundancy: 14.29 % / Rmerge(I) obs: 0.082 / Net I/σ(I): 19.4 |
Reflection shell | Resolution: 2→2.07 Å / Redundancy: 14.44 % / Rmerge(I) obs: 0.317 / Mean I/σ(I) obs: 6.1 / % possible all: 100 |
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Processing
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Refinement | Method to determine structure: ![]() Starting model: 1MLA Resolution: 2.1→30 Å / σ(F): 0 / Stereochemistry target values: Engh & Huber
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Refinement step | Cycle: LAST / Resolution: 2.1→30 Å
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