- PDB-2ctt: Solution structure of zinc finger domain from human DnaJ subfamil... -
+
Open data
ID or keywords:
Loading...
-
Basic information
Entry
Database: PDB / ID: 2ctt
Title
Solution structure of zinc finger domain from human DnaJ subfamily A menber 3
Components
DnaJ homolog subfamily A member 3
Keywords
CHAPERONE / DnaJ / Zing finger / beta-hairpin / structural genomics / NPPSFA / National Project on Protein Structural and Functional Analyses / RIKEN Structural Genomics/Proteomics Initiative / RSGI
Function / homology
Function and homology information
IkappaB kinase complex binding / type II interferon receptor binding / skeletal muscle acetylcholine-gated channel clustering / GTPase regulator activity / mitochondrial DNA replication / neuromuscular junction development / small GTPase-mediated signal transduction / activation-induced cell death of T cells / negative regulation of NF-kappaB transcription factor activity / negative regulation of type II interferon-mediated signaling pathway ...IkappaB kinase complex binding / type II interferon receptor binding / skeletal muscle acetylcholine-gated channel clustering / GTPase regulator activity / mitochondrial DNA replication / neuromuscular junction development / small GTPase-mediated signal transduction / activation-induced cell death of T cells / negative regulation of NF-kappaB transcription factor activity / negative regulation of type II interferon-mediated signaling pathway / response to type II interferon / mitochondrial nucleoid / NF-kappaB binding / positive regulation of T cell proliferation / negative regulation of canonical NF-kappaB signal transduction / Hsp70 protein binding / mitochondrion organization / positive regulation of protein ubiquitination / negative regulation of protein kinase activity / negative regulation of cysteine-type endopeptidase activity involved in apoptotic process / neuromuscular junction / cytoplasmic side of plasma membrane / activation of cysteine-type endopeptidase activity involved in apoptotic process / cellular senescence / unfolded protein binding / protein folding / T cell differentiation in thymus / response to heat / postsynaptic membrane / DNA-binding transcription factor binding / RNA polymerase II-specific DNA-binding transcription factor binding / protein stabilization / mitochondrial matrix / positive regulation of apoptotic process / negative regulation of cell population proliferation / intracellular membrane-bounded organelle / protein-containing complex binding / negative regulation of apoptotic process / protein kinase binding / negative regulation of transcription by RNA polymerase II / mitochondrion / ATP binding / nucleus / metal ion binding / cytoplasm / cytosol Similarity search - Function
Conformer selection criteria: target function,structures with the lowest energy,structures with the least restraint violations Conformers calculated total number: 100 / Conformers submitted total number: 20
+
About Yorodumi
-
News
-
Feb 9, 2022. New format data for meta-information of EMDB entries
New format data for meta-information of EMDB entries
Version 3 of the EMDB header file is now the official format.
The previous official version 1.9 will be removed from the archive.
In the structure databanks used in Yorodumi, some data are registered as the other names, "COVID-19 virus" and "2019-nCoV". Here are the details of the virus and the list of structure data.
Jan 31, 2019. EMDB accession codes are about to change! (news from PDBe EMDB page)
EMDB accession codes are about to change! (news from PDBe EMDB page)
The allocation of 4 digits for EMDB accession codes will soon come to an end. Whilst these codes will remain in use, new EMDB accession codes will include an additional digit and will expand incrementally as the available range of codes is exhausted. The current 4-digit format prefixed with “EMD-” (i.e. EMD-XXXX) will advance to a 5-digit format (i.e. EMD-XXXXX), and so on. It is currently estimated that the 4-digit codes will be depleted around Spring 2019, at which point the 5-digit format will come into force.
The EM Navigator/Yorodumi systems omit the EMD- prefix.
Related info.:Q: What is EMD? / ID/Accession-code notation in Yorodumi/EM Navigator
Yorodumi is a browser for structure data from EMDB, PDB, SASBDB, etc.
This page is also the successor to EM Navigator detail page, and also detail information page/front-end page for Omokage search.
The word "yorodu" (or yorozu) is an old Japanese word meaning "ten thousand". "mi" (miru) is to see.
Related info.:EMDB / PDB / SASBDB / Comparison of 3 databanks / Yorodumi Search / Aug 31, 2016. New EM Navigator & Yorodumi / Yorodumi Papers / Jmol/JSmol / Function and homology information / Changes in new EM Navigator and Yorodumi