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- PDB-2ccy: STRUCTURE OF FERRICYTOCHROME C(PRIME) FROM RHODOSPIRILLUM MOLISCH... -
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Open data
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Basic information
Entry | Database: PDB / ID: 2ccy | ||||||||||||
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Title | STRUCTURE OF FERRICYTOCHROME C(PRIME) FROM RHODOSPIRILLUM MOLISCHIANUM AT 1.67 ANGSTROMS RESOLUTION | ||||||||||||
![]() | CYTOCHROME C | ||||||||||||
![]() | ELECTRON TRANSPORT (HEME PROTEIN) | ||||||||||||
Function / homology | ![]() periplasmic space / electron transfer activity / iron ion binding / heme binding Similarity search - Function | ||||||||||||
Biological species | ![]() | ||||||||||||
Method | ![]() | ||||||||||||
![]() | Finzel, B.C. / Weber, P.C. / Hardman, K.D. / Salemme, F.R. | ||||||||||||
![]() | ![]() Title: Structure of ferricytochrome c' from Rhodospirillum molischianum at 1.67 A resolution. Authors: Finzel, B.C. / Weber, P.C. / Hardman, K.D. / Salemme, F.R. #1: ![]() Title: Lattice Mobility and Anomalous Temperature Factor Behaviour in Cytochrome C(Prime) Authors: Finzel, B.C. / Salemme, F.R. #2: ![]() Title: Crystallographic Structure of Rhodospirillum Molischianum Ferricytochrome C(Prime) at 2.5 Angstroms Resolution Authors: Weber, P.C. / Howard, A. / Xuong, N.H. / Salemme, F.R. #3: ![]() Title: Correlations between Structural and Spectroscopic Properties of the High-Spin Heme Protein Cytochrome C(Prime) Authors: Weber, P.C. #4: ![]() Title: On the Evolutionary Relationship of the 4-Alpha-Helical Heme Proteins. The Comparison of Cytochrome B562 and Cytochrome C(Prime) Authors: Weber, P.C. / Salemme, F.R. / Mathews, F.S. / Bethge, P.H. #5: ![]() Title: Structural and Functional Diversity in 4-Alpha-Helical Proteins Authors: Weber, P.C. / Salemme, F.R. #6: ![]() Title: Structure of Cytochrome C(Prime). A Dimeric, High-Spin Haem Protein Authors: Weber, P.C. / Bartsch, R.G. / Cusanovich, M.A. / Hamlin, R.C. / Howard, A. / Jordan, S.R. / Kamen, M.D. / Meyer, T.E. / Weatherford, D.W. / Xuong, N.H. / Salemme, F.R. #7: ![]() Title: Preliminary Crystallographic Data for Cytochromes C(Prime) of Rhodopseudomonas Capsulata and Rhodospirillum Molischianum Authors: Weber, P. / Salemme, F.R. | ||||||||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 62.6 KB | Display | ![]() |
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PDB format | ![]() | 50.1 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 1.1 MB | Display | ![]() |
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Full document | ![]() | 1.1 MB | Display | |
Data in XML | ![]() | 10.5 KB | Display | |
Data in CIF | ![]() | 14.6 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Atom site foot note | 1: RESIDUE GLN 42 IN BOTH CHAINS IS MODELLED IN TWO CONFORMATIONS. | ||||||||
Noncrystallographic symmetry (NCS) | NCS oper: (Code: given Matrix: (0.4673, 0.2938, -0.8339), Vector: |
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Components
#1: Protein | Mass: 13439.367 Da / Num. of mol.: 2 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() References: UniProt: P00152 #2: Chemical | #3: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.87 Å3/Da / Density % sol: 57.14 % | |||||||||||||||||||||||||
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Crystal grow | *PLUS Temperature: 4 ℃ / Method: vapor diffusionDetails: referred to 'Weber, P.', (1977) J.Mol.Biol., 117, 815-820 | |||||||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Reflection | *PLUS Highest resolution: 1.5 Å / Lowest resolution: 1.66 Å / Num. obs: 46290 / % possible obs: 72 % / Observed criterion σ(I): 1 / Num. measured all: 213471 |
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Processing
Software | Name: PROLSQ / Classification: refinement | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Refinement | Highest resolution: 1.67 Å / Num. reflection obs: 30533 / σ(I): 1 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Highest resolution: 1.67 Å
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Refine LS restraints |
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Refinement | *PLUS σ(I): 1 / Highest resolution: 1.67 Å / Lowest resolution: 9999 Å / Num. reflection obs: 30533 / Rfactor obs: 0.188 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Solvent computation | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refine LS restraints | *PLUS
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LS refinement shell | *PLUS Lowest resolution: 9999 Å |