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- PDB-2cb0: Crystal structure of glucosamine 6-phosphate deaminase from Pyroc... -
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Open data
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Basic information
Entry | Database: PDB / ID: 2cb0 | ||||||
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Title | Crystal structure of glucosamine 6-phosphate deaminase from Pyrococcus furiosus | ||||||
![]() | GLUCOSAMINE-FRUCTOSE-6-PHOSPHATE AMINOTRANSFERASE | ||||||
![]() | ISOMERASE / GLUCOSAMINE 6-PHOSPHATE DEAMINASE / CHITIN DEGRADATION / ALDOSE-KETOSE ISOMERASE | ||||||
Function / homology | ![]() carbohydrate derivative metabolic process / carbohydrate derivative binding / transaminase activity Similarity search - Function | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() ![]() | ||||||
![]() | Kim, K.J. / Kim, M.H. / Kang, B.S. | ||||||
![]() | ![]() Title: The Crystal Structure of a Novel Glucosamine-6-Phosphate Deaminase from the Hyperthermophilic Archaeon Pyrococcus Furiosus Authors: Kim, K.J. / Kim, M.H. / Kim, G. / Kang, B.S. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 139.2 KB | Display | ![]() |
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PDB format | ![]() | 116.2 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 448 KB | Display | ![]() |
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Full document | ![]() | 456 KB | Display | |
Data in XML | ![]() | 27.4 KB | Display | |
Data in CIF | ![]() | 39.4 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components on special symmetry positions |
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Components
#1: Protein | Mass: 38177.898 Da / Num. of mol.: 2 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() ![]() #2: Chemical | ChemComp-GOL / | #3: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 1.88 Å3/Da / Density % sol: 33.91 % |
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Crystal grow | pH: 6 / Details: pH 6.00 |
-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: ![]() ![]() |
Detector | Type: ADSC CCD / Detector: CCD / Date: Dec 2, 2005 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.9793 Å / Relative weight: 1 |
Reflection | Resolution: 1.8→30 Å / Num. obs: 40401 / % possible obs: 74 % / Observed criterion σ(I): 2.5 / Redundancy: 5.3 % / Rmerge(I) obs: 0.08 |
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Processing
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Refinement | Method to determine structure: OTHER / Resolution: 1.8→28.04 Å / Cor.coef. Fo:Fc: 0.952 / Cor.coef. Fo:Fc free: 0.922 / SU B: 2.887 / SU ML: 0.091 / Cross valid method: THROUGHOUT / ESU R: 0.195 / ESU R Free: 0.156 / Stereochemistry target values: MAXIMUM LIKELIHOOD / Details: HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS.
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Solvent computation | Ion probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.2 Å / Solvent model: MASK | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso mean: 18.37 Å2
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Refinement step | Cycle: LAST / Resolution: 1.8→28.04 Å
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Refine LS restraints |
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