TRANSPORT / VPS36 / PH DOMAIN / ESCRT-II / LIPID-BINDING / MULTIVESICULAR BODIES / MEMBRANE / METAL-BINDING / PROTEIN TRANSPORT / ZINC / ZINC-FINGER
機能・相同性
機能・相同性情報
ESCRT II complex / carbon catabolite repression of transcription from RNA polymerase II promoter by glucose / ATP export / protein retention in Golgi apparatus / Endosomal Sorting Complex Required For Transport (ESCRT) / cytoplasm to vacuole targeting by the Cvt pathway / protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway / protein targeting to vacuole / ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway / phosphatidylinositol-3-phosphate binding ...ESCRT II complex / carbon catabolite repression of transcription from RNA polymerase II promoter by glucose / ATP export / protein retention in Golgi apparatus / Endosomal Sorting Complex Required For Transport (ESCRT) / cytoplasm to vacuole targeting by the Cvt pathway / protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway / protein targeting to vacuole / ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway / phosphatidylinositol-3-phosphate binding / localization / ubiquitin binding / macroautophagy / late endosome membrane / metal ion binding 類似検索 - 分子機能
Vacuolar protein-sorting-associated protein 36, NZF-N zinc-finger domain / Vacuolar protein sorting 36 NZF-N zinc-finger domain / Vacuolar protein sorting protein 36, GLUE domain / Vacuolar protein sorting protein 36 / Snf8/Vps36 family / EAP30/Vps36 family / Vacuolar protein sorting protein 36 Vps36 / GLUE domain profile. / Zinc finger domain / Zinc finger, RanBP2-type superfamily ...Vacuolar protein-sorting-associated protein 36, NZF-N zinc-finger domain / Vacuolar protein sorting 36 NZF-N zinc-finger domain / Vacuolar protein sorting protein 36, GLUE domain / Vacuolar protein sorting protein 36 / Snf8/Vps36 family / EAP30/Vps36 family / Vacuolar protein sorting protein 36 Vps36 / GLUE domain profile. / Zinc finger domain / Zinc finger, RanBP2-type superfamily / Zinc finger, RanBP2-type / Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) / PH-domain like / PH-like domain superfamily / Winged helix DNA-binding domain superfamily / Roll / Winged helix-like DNA-binding domain superfamily / Mainly Beta 類似検索 - ドメイン・相同性
Vacuolar protein-sorting-associated protein 36 類似検索 - 構成要素
SHEET THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN ORDER TO REPRESENT THIS FEATURE IN ... SHEET THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, TWO SHEETS ARE DEFINED.
解像度: 1.6→44.19 Å / Num. obs: 31078 / % possible obs: 100 % / Observed criterion σ(I): 2 / 冗長度: 5.54 % / Rmerge(I) obs: 0.1 / Net I/σ(I): 5.34
反射 シェル
解像度: 1.9→2 Å / 冗長度: 3.61 % / Rmerge(I) obs: 0.39 / Mean I/σ(I) obs: 1.55 / % possible all: 100
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解析
ソフトウェア
名称
バージョン
分類
MOSFLM
データ削減
SCALA
データスケーリング
SnB
位相決定
SHARP
位相決定
REFMAC
5.2.0005
精密化
精密化
構造決定の手法: 多波長異常分散 / 解像度: 1.9→44.19 Å / Cor.coef. Fo:Fc: 0.946 / Cor.coef. Fo:Fc free: 0.926 / SU B: 2.679 / SU ML: 0.081 / 交差検証法: THROUGHOUT / ESU R: 0.126 / ESU R Free: 0.124 / 立体化学のターゲット値: MAXIMUM LIKELIHOOD / 詳細: HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS.
Rfactor
反射数
%反射
Selection details
Rfree
0.228
1556
5 %
RANDOM
Rwork
0.191
-
-
-
obs
0.193
29476
100 %
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溶媒の処理
イオンプローブ半径: 0.8 Å / 減衰半径: 0.8 Å / VDWプローブ半径: 1.2 Å / 溶媒モデル: MASK