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Open data
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Basic information
Entry | Database: PDB / ID: 2cam | ||||||
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Title | AVIDIN MUTANT (K3E,K9E,R26D,R124L) | ||||||
![]() | AVIDIN | ||||||
![]() | GLYCOPROTEIN / AVIDIN / BIOTIN BINDING PROTEIN / CALYCINS / UP-AND-DOWN BETA BARREL | ||||||
Function / homology | ![]() | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() ![]() | ||||||
![]() | Rosano, C. / Arosio, P. / Bolognesi, M. | ||||||
![]() | ![]() Title: Biochemical characterization and crystal structure of a recombinant hen avidin and its acidic mutant expressed in Escherichia coli. Authors: Nardone, E. / Rosano, C. / Santambrogio, P. / Curnis, F. / Corti, A. / Magni, F. / Siccardi, A.G. / Paganelli, G. / Losso, R. / Apreda, B. / Bolognesi, M. / Sidoli, A. / Arosio, P. #1: ![]() Title: Crystal Structure of Apo-Avidin from Hen Egg-White Authors: Pugliese, L. / Malcovati, M. / Coda, A. / Bolognesi, M. #2: ![]() Title: Three-Dimensional Structures of Avidin and the Avidin-Biotin Complex Authors: Livnah, O. / Bayer, E.A. / Wilchek, M. / Sussman, J.L. #3: ![]() Title: Three-Dimensional Structure of the Tetragonal Crystal Form of Egg-White Avidin in its Functional Complex with Biotin at 2.7 A Resolution Authors: Pugliese, L. / Coda, A. / Malcovati, M. / Bolognesi, M. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 60.4 KB | Display | ![]() |
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PDB format | ![]() | 47 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 425.7 KB | Display | ![]() |
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Full document | ![]() | 435.9 KB | Display | |
Data in XML | ![]() | 12.8 KB | Display | |
Data in CIF | ![]() | 17.3 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 1ravC ![]() 1aveS S: Starting model for refinement C: citing same article ( |
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Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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1 | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 14204.784 Da / Num. of mol.: 2 / Mutation: K3E, K9E, R26D, R124L Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() ![]() #2: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.5 Å3/Da / Density % sol: 50.8 % | ||||||||||||||||||||||||||||||||||||
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Crystal grow | Temperature: 295 K / Method: vapor diffusion / pH: 5.7 Details: RECOMBINANT AVIDIN WAS CRYSTALLIZED FROM AMMONIUM SULFATE 2M. PH 5.7 0.05 M PHOSPHATE BUFFER AT 22 C BY VAPOUR DIFFUSION TECHNIQUES., vapor diffusion, temperature 295K | ||||||||||||||||||||||||||||||||||||
Crystal | *PLUS | ||||||||||||||||||||||||||||||||||||
Crystal grow | *PLUS Temperature: 22 ℃ / Method: vapor diffusion / pH: 7.2 | ||||||||||||||||||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Diffraction | Mean temperature: 293 K |
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Diffraction source | Source: ![]() |
Detector | Type: RIGAKU RAXIS IIC / Detector: IMAGE PLATE / Date: Dec 1, 1997 |
Radiation | Monochromator: GRAPHITE(002) / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1.5418 Å / Relative weight: 1 |
Reflection | Resolution: 2.2→22 Å / Num. obs: 13827 / % possible obs: 95 % / Observed criterion σ(I): 0 / Redundancy: 3.6 % / Rmerge(I) obs: 0.045 / Net I/σ(I): 15 |
Reflection shell | Resolution: 2.2→2.7 Å / % possible all: 93.2 |
Reflection | *PLUS Num. measured all: 49395 |
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Processing
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Refinement | Method to determine structure: ![]() Starting model: PDB ENTRY 1AVE Resolution: 2.2→20.2 Å / Isotropic thermal model: TNT BCORREL / σ(F): 0 / Stereochemistry target values: TNT PROTGEO
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Solvent computation | Solvent model: TNT / Bsol: 150 Å2 / ksol: 0.78 e/Å3 | ||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 2.2→20.2 Å
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Refine LS restraints |
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Software | *PLUS Name: TNT / Version: 5E / Classification: refinement | ||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||
Solvent computation | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||
Refine LS restraints | *PLUS
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