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- PDB-2bpn: SOLUTION STRUCTURE OF DESULFOVIBRIO VULGARIS (HILDENBOROUGH) FERR... -
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Basic information
Entry | Database: PDB / ID: 2bpn | ||||||
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Title | SOLUTION STRUCTURE OF DESULFOVIBRIO VULGARIS (HILDENBOROUGH) FERRICYTOCHROME C3, NMR, 20 STRUCTURES | ||||||
![]() | CYTOCHROME C3 | ||||||
![]() | ELECTRON TRANSPORT / HEMEPROTEIN / CYTOCHROME C3 / REDOX COOPERATIVITY / REDOX-BOHR COOPERATIVITY / TRANSDUCTION / PARAMAGNETIC | ||||||
Function / homology | ![]() anaerobic respiration / periplasmic space / electron transfer activity / heme binding / metal ion binding Similarity search - Function | ||||||
Biological species | ![]() | ||||||
Method | SOLUTION NMR / TORSION ANGLE DYNAMICS WITH SIMULATED ANNEALING | ||||||
![]() | Messias, A.C. / Aguiar, A.P. / Brennan, L. / Xavier, A.V. / Turner, D.L. | ||||||
![]() | ![]() Title: Solution Structures of Tetrahaem Ferricytochrome C(3) from Desulfovibrio Vulgaris (Hildenborough) and its K45Q Mutant: The Molecular Basis of Cooperativity. Authors: Messias, A.C. / Aguiar, A.P. / Brennan, L. / Salgueiro, C.A. / Saraiva, L.M. / Xavier, A.V. / Turner, D.L. #1: ![]() Title: Solution Structure of Desulfovibrio Vulgaris (Hildenborough) Ferrocytochrome C3: Structural Basis for Functional Cooperativity. Authors: Messias, A.C. / Kastrau, D.H.W. / Costa, H.S. / Legall, J. / Turner, D.L. / Santos, H. / Xavier, A.V. #2: ![]() Title: Refinement of the Three-Dimensional Structures of Cytochromes C3 from Desulfovibrio Vulgaris Hildenborough at 1.67 A Resolution and from Desulfovibrio Desulfuricans Atcc27774 at 1.6 A Resolution Authors: Simoes, P. / Matias, P.M. / Morais, J. / Wilson, K. / Dauter, Z. / Carrondo, M.A. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 740.5 KB | Display | ![]() |
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PDB format | ![]() | 646.3 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Arichive directory | ![]() ![]() | HTTPS FTP |
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-Related structure data
Related structure data | |
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Similar structure data | |
Other databases |
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Links
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Assembly
Deposited unit | ![]()
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NMR ensembles |
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Components
#1: Protein | Mass: 11687.463 Da / Num. of mol.: 1 / Fragment: CYTOCHROME C3, RESIDUES 23-129 / Source method: isolated from a natural source / Source: (natural) ![]() | ||
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#2: Chemical | ChemComp-HEC / Compound details | PARTICIPATES IN SULFATE RESPIRATION COUPLED WITH PHOSPHORYLATION BY TRANSFERRING ELECTRONS FROM THE ...PARTICIPAT | |
-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||
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NMR experiment |
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NMR details | Text: NONE |
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Sample preparation
Details | Contents: 92% WATER/8% D2O AND 100% D2O |
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Sample conditions | pH: 7.1 / Temperature: 303.0 K |
-NMR measurement
NMR spectrometer | Type: Bruker DRX / Manufacturer: Bruker / Model: DRX / Field strength: 500 MHz |
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Processing
NMR software |
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Refinement | Method: TORSION ANGLE DYNAMICS WITH SIMULATED ANNEALING / Software ordinal: 1 Details: REFINEMENT DETAILS CAN BE FOUND IN THE JRNL CITATION ABOVE. | |||||||||
NMR ensemble | Conformer selection criteria: LEAST RESTRAINT VIOLATION / Conformers calculated total number: 155 / Conformers submitted total number: 20 |