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Yorodumi- PDB-2ajf: Structure of SARS coronavirus spike receptor-binding domain compl... -
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Basic information
| Entry | Database: PDB / ID: 2ajf | ||||||||||||
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| Title | Structure of SARS coronavirus spike receptor-binding domain complexed with its receptor | ||||||||||||
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Keywords | hydrolase/viral protein / antiparallel beta sheet / extended loop / hydrolase-viral protein COMPLEX | ||||||||||||
| Function / homology | Function and homology informationMaturation of spike protein / Translation of Structural Proteins / Virion Assembly and Release / positive regulation of amino acid transport / angiotensin-converting enzyme 2 / positive regulation of L-proline import across plasma membrane / Hydrolases; Acting on peptide bonds (peptidases); Metallocarboxypeptidases / angiotensin-mediated drinking behavior / positive regulation of gap junction assembly / regulation of systemic arterial blood pressure by renin-angiotensin ...Maturation of spike protein / Translation of Structural Proteins / Virion Assembly and Release / positive regulation of amino acid transport / angiotensin-converting enzyme 2 / positive regulation of L-proline import across plasma membrane / Hydrolases; Acting on peptide bonds (peptidases); Metallocarboxypeptidases / angiotensin-mediated drinking behavior / positive regulation of gap junction assembly / regulation of systemic arterial blood pressure by renin-angiotensin / tryptophan transport / regulation of cardiac conduction / maternal process involved in female pregnancy / peptidyl-dipeptidase activity / regulation of vasoconstriction / transporter activator activity / Metabolism of Angiotensinogen to Angiotensins / carboxypeptidase activity / angiotensin maturation / Attachment and Entry / receptor-mediated endocytosis of virus by host cell / metallocarboxypeptidase activity / viral life cycle / positive regulation of cardiac muscle contraction / regulation of cytokine production / blood vessel diameter maintenance / negative regulation of smooth muscle cell proliferation / brush border membrane / negative regulation of ERK1 and ERK2 cascade / positive regulation of reactive oxygen species metabolic process / metallopeptidase activity / SARS-CoV-1 activates/modulates innate immune responses / endocytic vesicle membrane / regulation of cell population proliferation / virus receptor activity / regulation of inflammatory response / endopeptidase activity / viral translation / symbiont-mediated-mediated suppression of host tetherin activity / Potential therapeutics for SARS / Induction of Cell-Cell Fusion / entry receptor-mediated virion attachment to host cell / membrane fusion / Attachment and Entry / host cell endoplasmic reticulum-Golgi intermediate compartment membrane / positive regulation of viral entry into host cell / receptor-mediated virion attachment to host cell / host cell surface receptor binding / cilium / symbiont-mediated suppression of host innate immune response / apical plasma membrane / membrane raft / endocytosis involved in viral entry into host cell / endoplasmic reticulum lumen / fusion of virus membrane with host plasma membrane / fusion of virus membrane with host endosome membrane / viral envelope / symbiont entry into host cell / host cell plasma membrane / virion membrane / cell surface / negative regulation of transcription by RNA polymerase II / extracellular space / extracellular exosome / extracellular region / zinc ion binding / identical protein binding / membrane / plasma membrane Similarity search - Function | ||||||||||||
| Biological species | Homo sapiens (human) SARS coronavirus | ||||||||||||
| Method | X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 2.9 Å | ||||||||||||
Authors | Li, F. / Li, W. / Farzan, M. / Harrison, S.C. | ||||||||||||
Citation | Journal: Science / Year: 2005Title: Structure of SARS coronavirus spike receptor-binding domain complexed with receptor. Authors: Li, F. / Li, W. / Farzan, M. / Harrison, S.C. | ||||||||||||
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Structure visualization
| Structure viewer | Molecule: Molmil Jmol/JSmol |
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Downloads & links
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Download
| PDBx/mmCIF format | 2ajf.cif.gz | 325 KB | Display | PDBx/mmCIF format |
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| PDB format | pdb2ajf.ent.gz | 262.7 KB | Display | PDB format |
| PDBx/mmJSON format | 2ajf.json.gz | Tree view | PDBx/mmJSON format | |
| Others | Other downloads |
-Validation report
| Summary document | 2ajf_validation.pdf.gz | 639.4 KB | Display | wwPDB validaton report |
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| Full document | 2ajf_full_validation.pdf.gz | 681.9 KB | Display | |
| Data in XML | 2ajf_validation.xml.gz | 64.9 KB | Display | |
| Data in CIF | 2ajf_validation.cif.gz | 83.4 KB | Display | |
| Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/aj/2ajf ftp://data.pdbj.org/pub/pdb/validation_reports/aj/2ajf | HTTPS FTP |
-Related structure data
| Related structure data | ![]() 1r42S S: Starting model for refinement |
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| Similar structure data |
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Assembly
| Deposited unit | ![]()
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| Noncrystallographic symmetry (NCS) | NCS domain:
NCS domain segments: Refine code: 4
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About Yorodumi



Homo sapiens (human)
SARS coronavirus
X-RAY DIFFRACTION
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