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- PDB-248d: CRYSTAL STRUCTURES OF AN A-FORM DUPLEX WITH SINGLE-ADENOSINE BULG... -
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Open data
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Basic information
Entry | Database: PDB / ID: 248d | ||||||||||||||||||
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Title | CRYSTAL STRUCTURES OF AN A-FORM DUPLEX WITH SINGLE-ADENOSINE BULGES AND A CONFORMATIONAL BASIS FOR SITE SPECIFIC RNA SELF-CLEAVAGE | ||||||||||||||||||
![]() | DNA/RNA (5'-R(*![]() DNA/RNA / A-DNA/RNA / DOUBLE HELIX / BULGES / DNA-RNA complex | Function / homology | SPERMINE / DNA/RNA hybrid / DNA/RNA hybrid (> 10) | ![]() Method | ![]() ![]() Portmann, S. / Grimm, S. / Workman, C. / Usman, N. / Egli, M. | ![]() ![]() Title: Crystal structures of an A-form duplex with single-adenosine bulges and a conformational basis for site-specific RNA self-cleavage. Authors: Portmann, S. / Grimm, S. / Workman, C. / Usman, N. / Egli, M. History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 17 KB | Display | ![]() |
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PDB format | ![]() | 10 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 329.2 KB | Display | ![]() |
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Full document | ![]() | 328.6 KB | Display | |
Data in XML | ![]() | 1.7 KB | Display | |
Data in CIF | ![]() | 2.3 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
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Links
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Assembly
Deposited unit | ![]()
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1 | ![]()
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Unit cell |
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Components on special symmetry positions |
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Components
#1: DNA/RNA hybrid | Mass: 3454.211 Da / Num. of mol.: 1 / Source method: obtained synthetically | ||
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#2: Chemical | #3: Water | ChemComp-HOH / | |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 1.83 Å3/Da / Density % sol: 32.86 % | ||||||||||||||||||||||||||||
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Crystal grow | Method: vapor diffusion / pH: 7.4 / Details: pH 7.40, VAPOR DIFFUSION | ||||||||||||||||||||||||||||
Components of the solutions |
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Crystal grow | *PLUS Method: unknown | ||||||||||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Diffraction | Ambient temp details: ROOM TEMPERATURE |
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Detector | Type: RIGAKU RAXIS II / Detector: IMAGE PLATE / Date: Nov 9, 1995 |
Radiation | Scattering type: x-ray |
Radiation wavelength | Relative weight: 1 |
Reflection | Resolution: 1.8→28.78 Å / Num. all: 9641 / Num. obs: 2264 / % possible obs: 94 % / Rmerge(I) obs: 0.081 |
Reflection | *PLUS % possible obs: 94 % |
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Processing
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Refinement | Resolution: 1.83→10 Å / σ(F): 2
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Refine Biso |
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Refinement step | Cycle: LAST / Resolution: 1.83→10 Å
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Refine LS restraints |
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