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Open data
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Basic information
Entry | Database: PDB / ID: 1zrw | ||||||
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Title | solution structure of spinigerin in H20/TFE 10% | ||||||
![]() | spinigerin | ||||||
![]() | ANTIMICROBIAL PROTEIN / ANTIBIOTIC / helical peptide in TFE | ||||||
Function / homology | defense response to fungus / killing of cells of another organism / defense response to bacterium / extracellular region / Spinigerin![]() | ||||||
Method | SOLUTION NMR / molecular dynamics | ||||||
![]() | Landon, C. / Meudal, H. / Boulanger, N. / Bulet, P. / Vovelle, F. | ||||||
![]() | ![]() Title: Solution structures of stomoxyn and spinigerin, two insect antimicrobial peptides with an alpha-helical conformation. Authors: Landon, C. / Meudal, H. / Boulanger, N. / Bulet, P. / Vovelle, F. #1: ![]() Title: Insect immunity. Constitutive expression of a cysteine-rich antifungal and a linear antibacterial peptide in a termite insect Authors: Lamberty, M. / Zachary, D. / Lanot, R. / Bordereau, C. / Robert, A. / Hoffmann, J.A. / Bulet, P. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 302.8 KB | Display | ![]() |
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PDB format | ![]() | 255.6 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 340.1 KB | Display | ![]() |
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Full document | ![]() | 525.8 KB | Display | |
Data in XML | ![]() | 16.6 KB | Display | |
Data in CIF | ![]() | 25.3 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
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Links
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Assembly
Deposited unit | ![]()
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NMR ensembles |
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Components
#1: Protein/peptide | Mass: 3008.799 Da / Num. of mol.: 1 / Source method: obtained synthetically Details: solid-phase synthesis (Fmoc). Sequence occurs naturally in Pseudacanthotermes spiniger References: UniProt: P82357 |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||
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NMR experiment |
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NMR details | Text: This structure was determined using standard 2D homonuclear techniques. |
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Sample preparation
Details | Contents: 1.5mM spinigerin / Solvent system: 90% H2O, 10% TFE |
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Sample conditions | pH: 5.7 / Pressure: ambiant / Temperature: 298 K |
-NMR measurement
NMR spectrometer | Type: Varian INOVA / Manufacturer: Varian / Model: INOVA / Field strength: 600 MHz |
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Processing
NMR software |
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Refinement | Method: molecular dynamics / Software ordinal: 1 | ||||||||||||||||||||||||||||
NMR representative | Selection criteria: representative conformer | ||||||||||||||||||||||||||||
NMR ensemble | Conformer selection criteria: structures with the least restraint violations Conformers calculated total number: 100 / Conformers submitted total number: 30 |