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- PDB-1zih: GCAA RNA TETRALOOP, NMR, 10 STRUCTURES -

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Basic information

Entry
Database: PDB / ID: 1zih
TitleGCAA RNA TETRALOOP, NMR, 10 STRUCTURES
ComponentsRNA (5'-R(*GP*GP*GP*CP*GP*CP*AP*AP*GP*CP*CP*U)-3')
KeywordsRNA / RIBONUCLEIC ACID / TETRALOOPS / GNRA / HAIRPIN
Function / homologyRNA / RNA (> 10)
Function and homology information
MethodSOLUTION NMR
AuthorsJucker, F.M. / Heus, H.A. / Yip, P.F. / Moors, E. / Pardi, A.
Citation
Journal: J.Mol.Biol. / Year: 1996
Title: A network of heterogeneous hydrogen bonds in GNRA tetraloops.
Authors: Jucker, F.M. / Heus, H.A. / Yip, P.F. / Moors, E.H. / Pardi, A.
#1: Journal: Science / Year: 1991
Title: Structural Features that Give Rise to the Unusual Stability of RNA Hairpins Containing Gnra Loops
Authors: Heus, H.A. / Pardi, A.
History
DepositionJul 27, 1996Processing site: BNL
Revision 1.0Mar 12, 1997Provider: repository / Type: Initial release
Revision 1.1Mar 24, 2008Group: Version format compliance
Revision 1.2Jul 13, 2011Group: Version format compliance
Revision 1.3Mar 2, 2022Group: Database references / Derived calculations / Other
Category: database_2 / pdbx_database_status ...database_2 / pdbx_database_status / pdbx_struct_assembly / pdbx_struct_oper_list
Item: _database_2.pdbx_DOI / _database_2.pdbx_database_accession / _pdbx_database_status.process_site
Revision 1.4May 22, 2024Group: Data collection / Category: chem_comp_atom / chem_comp_bond

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Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

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Assembly

Deposited unit
A: RNA (5'-R(*GP*GP*GP*CP*GP*CP*AP*AP*GP*CP*CP*U)-3')


Theoretical massNumber of molelcules
Total (without water)3,8661
Polymers3,8661
Non-polymers00
Water00
1


  • Idetical with deposited unit
  • defined by author
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
NMR ensembles
DataCriteria
Number of conformers (submitted / calculated)10 / -
Representative

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Components

#1: RNA chain RNA (5'-R(*GP*GP*GP*CP*GP*CP*AP*AP*GP*CP*CP*U)-3') / GCAA


Mass: 3866.376 Da / Num. of mol.: 1 / Source method: obtained synthetically

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Experimental details

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Experiment

ExperimentMethod: SOLUTION NMR
NMR experimentType: 6.8

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Sample preparation

Sample conditionsTemperature: 298 K
Crystal grow
*PLUS
Method: other / Details: NMR

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Processing

Software
NameVersionClassification
X-PLOR3.1model building
X-PLOR3.1refinement
X-PLOR3.1phasing
NMR softwareName: X-PLOR / Version: 3.1 / Developer: BRUNGER / Classification: refinement
NMR ensembleConformers submitted total number: 10

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